Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H12
         (186 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    25   1.00 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    23   5.3  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    23   7.0  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    22   9.3  

>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.4 bits (53), Expect = 1.00
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 3   TRHHESLLLTLYILNRTHRYLT*SRNIYMYNK 98
           +RH    L+TLY LN   +YL     ++++ K
Sbjct: 126 SRHFTQRLVTLYYLNYLTKYLELMDTVFLFLK 157


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   TRHHESLLLTLYILNRTHRY 62
           +R HE  +L  Y+LNRT RY
Sbjct: 849 SRFHEKQILLNYMLNRT-RY 867


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 57  RYLT*SRNIYMYNKLCKEY 113
           +Y+T S ++Y+ NK C  +
Sbjct: 261 KYVTRSSSVYLLNKSCAHF 279


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 60  IYEFYLKYIK*EVNSHDAS 4
           +Y F+L+Y+  E N+  AS
Sbjct: 171 VYSFHLEYVPLESNTFSAS 189


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,306
Number of Sequences: 5004
Number of extensions: 6871
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 42
effective length of database: 2,152,310
effective search space used: 40893890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)