Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H12
         (186 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   1.8  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    19   7.2  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    19   7.2  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    19   7.2  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               18   9.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    18   9.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 69  KLNIYEFYLKYIK 31
           KLN+ EFY+ + K
Sbjct: 290 KLNVNEFYMAFSK 302


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 54  HRYLT*SRNIYMYNKLC 104
           +RYLT  R I + + LC
Sbjct: 30  NRYLTRRRRIEIAHALC 46


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 54  HRYLT*SRNIYMYNKLC 104
           +RYLT  R I + + LC
Sbjct: 30  NRYLTRRRRIEIAHALC 46


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 54  HRYLT*SRNIYMYNKLC 104
           +RYLT  R I + + LC
Sbjct: 292 NRYLTRRRRIEIAHALC 308


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 70  SQEIFICIINYVK 108
           +Q+   C+I+YVK
Sbjct: 114 AQKFSRCVIDYVK 126


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 33  LYILNRTHRYLT*SRNIYMYNKLCKEY 113
           LYIL+    Y + + N  +YN +  +Y
Sbjct: 309 LYILSGCLYYFSTTINPILYNLMSIKY 335


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,404
Number of Sequences: 438
Number of extensions: 535
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 41
effective length of database: 128,385
effective search space used:  2567700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)