Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H11
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    30   0.12 
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    25   3.4  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    25   4.5  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    24   6.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    24   6.0  
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    24   7.9  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    24   7.9  
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    24   7.9  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 29.9 bits (64), Expect = 0.12
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -1

Query: 209 ANQRDAAINALINATPSSTRKKTRRHHQRANKRDAAINEQYKANTSQT 66
           AN      N    +TP  ++KKT +  Q AN   A   E+   ++++T
Sbjct: 543 ANDTSKNANGETKSTPKKSKKKTSKAQQEANSTTAEGKEKLSGDSTET 590


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 167 TPSSTRKKTRRHHQRANKRDAAINEQYKANTSQT 66
           TP  T+   R+ H R   R +  +++  +N+S++
Sbjct: 9   TPKKTKNPYRKGHSRRQSRHSIPSDELNSNSSKS 42


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 339 SNKFLFSELVIRQSYNIYTNALLNIMYVFPNA 244
           S  F F  +    S+ I+TN L+++    PN+
Sbjct: 441 SQNFFFESINTEYSFIIFTNLLMHLEKTSPNS 472


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -1

Query: 173 NATPSSTRKKTRRHHQRANKRDAAINEQYKAN 78
           NATP+S R+ T+     +N  D   +  ++ N
Sbjct: 382 NATPASVRQSTQNDFSNSNIHDRRSSYTFQLN 413


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 136 ATINALTNATPPSTNNTKRIHLKRRSNSASDTTI 35
           ++ N+ T+ATP S+  +  +     SNSA+ +++
Sbjct: 162 SSTNSTTSATPTSSATSSSLSSTAASNSATSSSL 195


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 149 KKTRRHHQRANKRDAAINEQYKAN 78
           K  R+HHQ   KR A I+ Q   N
Sbjct: 133 KTFRKHHQECVKRRATISVQGNPN 156


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 336  NKFLFSELVIRQSYNIY 286
            N FLF + ++R+ YN Y
Sbjct: 1617 NDFLFLQTILRKIYNFY 1633


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 116 KRDAAINEQYKANTSQTTIEQCE*HYNYHENKTIK 12
           K+D ++ ++ K   ++T  EQ    Y Y+ N+ +K
Sbjct: 169 KKDKSLKDEKKLYEAETAFEQSSQEYEYY-NEMLK 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,165,452
Number of Sequences: 5004
Number of extensions: 17026
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)