Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H11
         (350 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical ...    31   0.31 
U23172-16|AAC46524.1|  757|Caenorhabditis elegans Hypothetical p...    29   1.2  
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    27   2.9  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    27   2.9  
AL117200-6|CAB55058.1|  209|Caenorhabditis elegans Hypothetical ...    27   2.9  
AF024493-11|AAK68347.1|  432|Caenorhabditis elegans Hypothetical...    27   2.9  
AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical ...    27   2.9  
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr...    26   6.6  
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ...    26   6.6  
Z81054-10|CAB02882.3|  561|Caenorhabditis elegans Hypothetical p...    26   8.7  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    26   8.7  

>AF003143-2|AAK68267.2|  554|Caenorhabditis elegans Hypothetical
           protein C53H9.2a protein.
          Length = 554

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -1

Query: 221 RRTEANQRDAAINALINATPSSTRKKTRRHHQRA 120
           +R  +N++ + +N  +  + S+ R+KTR+ HQRA
Sbjct: 3   KRRASNKKPSGLNKSLGNSLSNDREKTRKSHQRA 36


>U23172-16|AAC46524.1|  757|Caenorhabditis elegans Hypothetical
           protein F25B5.2 protein.
          Length = 757

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -1

Query: 206 NQRDAAINALINATPSSTRKKTRRHHQRANKRDAAINEQYKANTSQTTIEQCE 48
           N+R +     +    SST  K+      ++K D   NE + + TS+++I   E
Sbjct: 40  NRRSSIFKGFLKKVKSSTTLKSTNKSASSSKMDTIANETHLSITSESSITSVE 92


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 118 TNATPPSTNNTKRIHLKRRSNSASDTTITMKIKQSNF 8
           T  TPPS N +K    K+R +   D    MK K S F
Sbjct: 155 TQTTPPSNNTSKSKKKKKRKSDEEDGLRKMK-KSSTF 190


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -2

Query: 118 TNATPPSTNNTKRIHLKRRSNSASDTTITMKIKQSNF 8
           T  TPPS N +K    K+R +   D    MK K S F
Sbjct: 188 TQTTPPSNNTSKSKKKKKRKSDEEDGLRKMK-KSSTF 223


>AL117200-6|CAB55058.1|  209|Caenorhabditis elegans Hypothetical
           protein Y50E8A.10 protein.
          Length = 209

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -1

Query: 269 ILCMSSLMLRRRICHLRRTEANQRDAAINALINATPSSTRKKTRRHHQRANKRDAA 102
           I+C      ++  CH+R    + R A I+   +A P STR    +  ++   +D++
Sbjct: 23  IICFCKPPRQKNSCHVREMTNSMRAAPIS---DAIPDSTRTALDKEEKKKRSKDSS 75


>AF024493-11|AAK68347.1|  432|Caenorhabditis elegans Hypothetical
           protein F23F1.9 protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = -1

Query: 266 LCMSSLMLRRRICHLRRTEANQRDA---AINALINATPSSTRKKTRRHHQRANKRDAAIN 96
           L    L  ++  CH+R  E+N+  A    + + ++  P   +  T   H +  ++ A I 
Sbjct: 3   LSSEELSAKKTACHVRNVESNKEFADSDIVASFVHNRPKDLKNLTFERHGKGGRKKAPI- 61

Query: 95  EQYKANTSQTTIE 57
              K + S+  +E
Sbjct: 62  FSVKGDISEHVVE 74


>AC006698-1|AAF39993.3|  398|Caenorhabditis elegans Hypothetical
           protein W10C4.1 protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -1

Query: 281 MHY*ILCMSSLMLRRRICHLRRTEANQRDAAINALINAT 165
           +++ + C+SS   RRR+ +  R++   RD   +  IN T
Sbjct: 339 LNFVVFCLSSSSFRRRLTNTLRSKYGSRDEKRSHSINTT 377


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 167 TPSSTRKKTRRHHQRANKRDAAINEQY 87
           T    +K  RRHHQR NK  ++ ++Q+
Sbjct: 72  TSKPVQKPYRRHHQRPNKAWSSGSQQF 98


>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
           protein F36H2.1c protein.
          Length = 1071

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 269 ILCMSSLMLRRRICHLRRTEANQRDAAINALINATPSS 156
           +LC  SL  RRR+ H R           +A +  TP++
Sbjct: 67  MLCCRSLFSRRRVLHSRTVRVGYGPVGHDANVTFTPNT 104


>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
           protein F36H2.1c protein.
          Length = 1071

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 269 ILCMSSLMLRRRICHLRRTEANQRDAAINALINATPSS 156
           +LC  SL  RRR+ H R           +A +  TP++
Sbjct: 67  MLCCRSLFSRRRVLHSRTVRVGYGPVGHDANVTFTPNT 104


>Z81054-10|CAB02882.3|  561|Caenorhabditis elegans Hypothetical
           protein F01D4.3 protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -1

Query: 212 EANQRDAAINALINATPSSTRKKTRRHHQRANKRDAAINEQYKANT 75
           ++N+  +  NA   A P+ST K T+R       R+A   E+ +  T
Sbjct: 18  KSNKPKSPPNASPGAAPTSTTKTTKRASGSKGSREATEEEKKEERT 63


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 213 protein.
          Length = 1437

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 119  NKRDAAINEQYKANTSQTTIEQC 51
            NK+D+ I+EQ+  +  +  I+QC
Sbjct: 938  NKKDSLIDEQFHNSVLEALIQQC 960


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,541,388
Number of Sequences: 27780
Number of extensions: 97651
Number of successful extensions: 361
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)