Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H09
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    95   7e-21
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    54   9e-09
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    44   1e-05
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    30   0.17 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    28   0.67 
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    28   0.89 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    27   1.6  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    26   2.7  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   4.7  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    25   4.7  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   4.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   6.3  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    25   6.3  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    25   6.3  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   6.3  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   6.3  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 94.7 bits (225), Expect = 7e-21
 Identities = 42/66 (63%), Positives = 54/66 (81%)
 Frame = +1

Query: 271 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
           +P  ++ G N V  L+E KKA+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG
Sbjct: 128 KPYNVKYGLNHVVALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLG 187

Query: 451 ALVHRK 468
            ++H+K
Sbjct: 188 TVIHQK 193



 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 21/33 (63%), Positives = 25/33 (75%)
 Frame = +3

Query: 102 LPPPINQFTQTLDKTTAKGLFKILEKYRPETEA 200
           +PP I QF +TLDK TA  +FK+L KYRPET A
Sbjct: 71  VPPAIAQFQKTLDKNTATQVFKLLNKYRPETAA 103



 Score = 32.3 bits (70), Expect = 0.041
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = +2

Query: 38  VRWPKYIRIQRQKAVLQRPL--PPAAA 112
           V+WP+YIR+QR++ +L   L  PPA A
Sbjct: 50  VKWPEYIRLQRRRKILNLRLKVPPAIA 76


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 54.4 bits (125), Expect = 9e-09
 Identities = 24/56 (42%), Positives = 34/56 (60%)
 Frame = +1

Query: 283 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
           LR G N  TK + +  ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 292 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRK 468
           G   V K V K +  LV++A D+ P++++  +P LC    VPY     K  LG   + K
Sbjct: 57  GVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTK 115


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 241 PWLRRLSLDALS*NASVSGLYFSKILNRPLAVVLSNVW--VNWLIGGGRGERTL 86
           P+L  L LDA++   +  GL+  +   R + +++  VW  + + I    G R L
Sbjct: 300 PYLSALILDAVNFGCTFGGLFVLEFFGRRMPLIIGGVWQSITFFIYAAVGNRAL 353


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 241 PWLRRLSLDALS*NASVSGLYFSKILNRPLAVVLSNVW--VNWLIGGGRGERTL 86
           P+L  L LDA++   +  GL+  +   R + +++  +W  + + I    G R L
Sbjct: 300 PYLSALILDAVNFGCTFGGLFVLEFFGRRMPLIIGALWQSITFFIYAAVGNRAL 353


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.9 bits (59), Expect = 0.89
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 241 PWLRRLSLDALS*NASVSGLYFSKILNRPLAVVLSNVW--VNWLIGGGRGERTL 86
           P+L  L LDA++   +  GL+  +   R + +++  VW  + + I    G R L
Sbjct: 300 PYLASLILDAVNFGCTFGGLFVLEYCGRRVPLIIGGVWQSICFFIYAAVGNRAL 353


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = -3

Query: 241 PWLRRLSLDALS*NASVSGLYFSKILNRPLAVVLSNVW--VNWLIGGGRGERTL*H 80
           P+L  + LDA++   +  G+Y  +   R   +++  +W  + + I    G R L H
Sbjct: 304 PYLSAMILDAVNFGCTFGGMYVLERFGRRNPLIIGGIWQSICFFIYSAVGSRALYH 359


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +3

Query: 72  KRLCYSVLSPLPPPINQFTQTLDKTT 149
           +++CY+V SP  PPI+ F+  + K+T
Sbjct: 53  RQICYNVASPNEPPID-FSFLMHKST 77


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 446 NRDLPFTIQYGTPILRQSAGRKSTSSIGS 360
           + +LPF      P++R S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 106 RRQSTSSPRH*IKPQPKVCSRSWRNTG 186
           R Q+TSSP + ++PQ KV +  +   G
Sbjct: 188 RMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +3

Query: 117 NQFTQTLDKTTAKGL----FKILEKYRPETEAF 203
           NQ   ++D+ T KGL    +K+LEK  PE   F
Sbjct: 145 NQRIGSVDQLTTKGLSKLTYKVLEKLFPENTQF 177


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 401 RQSAGRKSTSSIGSTS*AMTTSCAFFFSTSLVT 303
           +Q +  KS+  +G T+   TTS +  F+T+L T
Sbjct: 633 QQISSNKSSEFVGQTTTEYTTSGSVGFTTTLAT 665


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +3

Query: 15  NQRSIPFRCDGRNIFAS--SVKRLCYSVLSPLP-PPINQFTQ-TLDKT 146
           N R + F CDGRN  A   +V R    ++  LP  P N FT  + D+T
Sbjct: 482 NDRPVFFGCDGRNTTAGNHTVTRDTPPLVIYLPNVPYNYFTNISTDRT 529


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 165 KILEKYRPETEAFQERA 215
           KI+EKY  ET+A  ERA
Sbjct: 45  KIIEKYLGETDAVYERA 61


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +3

Query: 147 TAKGLFKILEKYR 185
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 428 TIQYGTPILRQSAGRKS-TSSIGSTS*AMTTSCAFFFSTSLVTVLVPA 288
           T+     I+  +AG  + T+S+GS+S A T + A   ST  V  +VP+
Sbjct: 780 TVSGTVMIVEPTAGYVTVTTSLGSSSYATTVATASGTSTGTVLQVVPS 827


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,185
Number of Sequences: 5004
Number of extensions: 37608
Number of successful extensions: 115
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)