Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H09
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 104 3e-23
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 102 2e-22
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 70 9e-13
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 50 1e-06
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 49 2e-06
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 42 3e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 42 3e-04
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 35 0.041
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 35 0.041
08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150 31 0.67
11_01_0750 - 6315126-6315896,6316371-6316784 30 0.89
06_03_0719 - 23845879-23845881,23846197-23846253,23846786-238470... 30 1.2
07_03_1026 - 23369298-23370326 28 3.6
12_02_0887 + 24018847-24019281 28 4.7
06_01_0765 - 5723130-5724631,5725218-5725386 28 4.7
12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823... 27 6.3
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 27 6.3
02_04_0134 - 20109610-20109984 27 6.3
02_02_0277 + 8489717-8491468,8491571-8491610,8491719-8491841,849... 27 6.3
08_01_0897 - 8839134-8839718 27 8.3
07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166... 27 8.3
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 27 8.3
01_01_0191 - 1669631-1669924 27 8.3
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 104 bits (250), Expect = 3e-23
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = +1
Query: 271 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG
Sbjct: 124 KPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLG 183
Query: 451 ALVHRK 468
++VH+K
Sbjct: 184 SIVHKK 189
Score = 50.4 bits (115), Expect = 8e-07
Identities = 29/61 (47%), Positives = 36/61 (59%)
Frame = +3
Query: 102 LPPPINQFTQTLDKTTAKGLFKILEKYRPETEAFQERASKESRRSQGC*ER*AATEKAKH 281
+PP +NQFT+TLDK A LFK+L KYRPE +A A KE + E T +AK
Sbjct: 69 VPPALNQFTRTLDKNLATNLFKMLLKYRPEDKA----AKKERLLKRAQAEAEGKTVEAKK 124
Query: 282 P 284
P
Sbjct: 125 P 125
Score = 34.3 bits (75), Expect = 0.055
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 38 VRWPKYIRIQRQKAVL-QRPLPPAAANQ 118
V+WPK +RIQRQ+ +L QR P A NQ
Sbjct: 48 VKWPKVVRIQRQRRILKQRLKVPPALNQ 75
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 102 bits (244), Expect = 2e-22
Identities = 45/66 (68%), Positives = 58/66 (87%)
Frame = +1
Query: 271 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
+P ++ G + VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG
Sbjct: 109 KPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLG 168
Query: 451 ALVHRK 468
++VH+K
Sbjct: 169 SIVHKK 174
Score = 35.5 bits (78), Expect = 0.024
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 38 VRWPKYIRIQRQKAVL-QRPLPPAAANQ 118
VRWPK +RIQRQ+ VL QR P A NQ
Sbjct: 49 VRWPKAVRIQRQRRVLKQRLKVPPALNQ 76
Score = 32.3 bits (70), Expect = 0.22
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 102 LPPPINQFTQTLDKTTAKGLFKILEKYRPETEAFQERASK 221
+PP +NQFT+TLDK ++L++ + E E A K
Sbjct: 70 VPPALNQFTRTLDKNLGCQKERLLKRAQAEAEGKTVEAKK 109
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 70.1 bits (164), Expect = 9e-13
Identities = 32/48 (66%), Positives = 40/48 (83%)
Frame = +1
Query: 271 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 414
+P ++ G N VT L+E+ KAQLVVIAHDVDPIELV++LPALCRKM +
Sbjct: 108 KPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
Score = 50.4 bits (115), Expect = 8e-07
Identities = 29/61 (47%), Positives = 36/61 (59%)
Frame = +3
Query: 102 LPPPINQFTQTLDKTTAKGLFKILEKYRPETEAFQERASKESRRSQGC*ER*AATEKAKH 281
+PP +NQFT+TLDK A LFK+L KYRPE +A A KE + E T +AK
Sbjct: 53 VPPALNQFTRTLDKNLATNLFKMLLKYRPEDKA----AKKERLLKRAQAEAEGKTVEAKK 108
Query: 282 P 284
P
Sbjct: 109 P 109
Score = 34.3 bits (75), Expect = 0.055
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 38 VRWPKYIRIQRQKAVL-QRPLPPAAANQ 118
V+WPK +RIQRQ+ +L QR P A NQ
Sbjct: 32 VKWPKVVRIQRQRRILKQRLKVPPALNQ 59
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 50.0 bits (114), Expect = 1e-06
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +1
Query: 283 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
L+ G N TK + + A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 33 LKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +1
Query: 283 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
L+ G N TK + + ++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 35 LKKGANEATKTLNRGISEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +1
Query: 283 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 447
L+ G V K + + + L +IA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDL 99
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 41.9 bits (94), Expect = 3e-04
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +1
Query: 283 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL 447
L+ G V K + + L VIA ++ PI+++ +P LC + +PY V K L
Sbjct: 45 LKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDL 99
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 34.7 bits (76), Expect = 0.041
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 292 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 34.7 bits (76), Expect = 0.041
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 292 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
G K +EK AQL V+A D D + V + ALC + V V LG
Sbjct: 41 GLREAAKAIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>08_01_0702 - 6205731-6206516,6207521-6207549,6208135-6208150
Length = 276
Score = 30.7 bits (66), Expect = 0.67
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +2
Query: 8 GSQPEIYPVSVRWPKYIRIQRQKAVLQRPLPPAAANQPVHPDIR*NHSQRSVQDLGEIQ 184
G P+ Y V+ P + ++ A P P A PV+P H Q ++Q + ++Q
Sbjct: 42 GDNPDAYAVTTYQP-VLMVEPSAAAAFPPAPQVAPAYPVNPMQLPEHQQHAIQQVQQLQ 99
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 30.3 bits (65), Expect = 0.89
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1
Query: 483 TLVQV-FTVYKRTQS*FTLHDTVRDSHLTAKRWQEEHKFDWVYVMSDDH 340
T V+V F Y RT+ F +HD + L K+ + E KF + DDH
Sbjct: 205 TSVEVPFVEYDRTRL-FAVHDNFKVIKLPYKQGKNERKFSMYIFLPDDH 252
>06_03_0719 -
23845879-23845881,23846197-23846253,23846786-23847011,
23847118-23847245,23847339-23847444,23847543-23847622,
23847773-23847870,23848015-23848128,23848239-23848379,
23849012-23849096,23849789-23850016
Length = 421
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +3
Query: 99 PLPPPI-NQFTQTLDKTTAKGLFKILEKYRPETEAFQERASKESRR 233
PLPPP+ N ++++ G++ + P+T FQ+ S + R+
Sbjct: 337 PLPPPMRNAYSRSTSFDQHSGVYSRSSSFGPQTSGFQQSESFKQRQ 382
>07_03_1026 - 23369298-23370326
Length = 342
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = +1
Query: 79 CVTASSPPCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLR-HFR 207
C T SSP + T SP +P P S R ++ R H R
Sbjct: 263 CATTSSPRVQPSPTPSPAPAARPDPSAAENSLREAIERARPHMR 306
>12_02_0887 + 24018847-24019281
Length = 144
Score = 27.9 bits (59), Expect = 4.7
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Frame = +1
Query: 31 RFGAMAEIYSHPASKGCVTASSPPCRRQSTSSPRH*IKPQPKVCSRSWR----NTGQKLR 198
R AM I HP S+ + S +P H I P+P SR R N G + R
Sbjct: 21 RLWAMRRIPPHPRSRPDAAHAIDRATSASRVAPVHRIVPRPNSVSRQVRPSAANPGIRQR 80
Query: 199 HFR 207
H R
Sbjct: 81 HAR 83
>06_01_0765 - 5723130-5724631,5725218-5725386
Length = 556
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 82 VTASSPPCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRHFR 207
V ++PPCRR + P + P C R W + G+ + H R
Sbjct: 500 VNGTAPPCRRDMSMEPCFHVAPLYD-CKR-WEDAGKIVPHVR 539
>12_02_0917 +
24281029-24281137,24281998-24282095,24282196-24282372,
24282490-24282590,24282684-24282759,24282843-24282902,
24282999-24283195,24283296-24283392,24283478-24283564,
24283925-24283983,24284535-24284626,24284706-24284783,
24284891-24285051,24285303-24285530
Length = 539
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -2
Query: 482 RSCKSLRCTSAPNRDLPFTIQYGTPILRQSAGRKSTSSIGSTS*AMTTSCAFFFSTSLVT 303
R+ KS +SAP +P+ Q+GTPI +AG S +G+ + S F+T+ +
Sbjct: 261 RTDKSYLISSAPWIKIPYPFQWGTPIF--TAGH-SFGMMGAVLVSAFESTGAHFATARLA 317
Query: 302 VLVP 291
P
Sbjct: 318 GATP 321
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 440 DLPFTIQYGTPILRQSAGRKSTSSIGS 360
D+PF Y P++R + GRK + S+G+
Sbjct: 670 DVPFEKVYLHPMIRDAHGRKMSKSLGN 696
>02_04_0134 - 20109610-20109984
Length = 124
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = +3
Query: 213 ASKESRRSQGC*ER*AATEKAKHPTRWNQHCYQAC*EEEGTACGHRS*RRP 365
A+ + R Q C E+ AA + + RW + C C + + C RRP
Sbjct: 15 AASRAERRQACSEQGAAKQARRLERRWAKQC--GCRQPQSEWCVANQCRRP 63
>02_02_0277 +
8489717-8491468,8491571-8491610,8491719-8491841,
8491959-8492014
Length = 656
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 29 PVSVRWPKYIRIQRQKAVLQRPLPP 103
PV+ RW IR+ R+K + P PP
Sbjct: 33 PVTSRWAPEIRVYRRKYPRKNPKPP 57
>08_01_0897 - 8839134-8839718
Length = 194
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 17 PEIYPVSVRWPKYIRIQRQKAVLQRPLPPAAA 112
P PV V +P+ +++Q+Q+ P P AAA
Sbjct: 69 PASSPVVVHYPRRVQVQQQQQPSLSPSPVAAA 100
>07_03_0909 + 22512313-22512474,22513151-22513465,22513539-22516633,
22516812-22516910,22517031-22517379
Length = 1339
Score = 27.1 bits (57), Expect = 8.3
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 292 GTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYC 423
G TV L++ KK +++ +AHD+ L P K+ + YC
Sbjct: 1040 GVFTVAGLLKFKKEEILQLAHDLCDEFQALGKPGDAAKIALEYC 1083
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 27.1 bits (57), Expect = 8.3
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 478 RASLYGVQAHPIVIYPSRYSTGL-PSYGK-ALAGRAQ 374
R SL+G AH Y S STGL PSY + L G+ +
Sbjct: 1957 RVSLFGHAAHAYFQYLSHSSTGLQPSYHRDVLKGKTK 1993
>01_01_0191 - 1669631-1669924
Length = 97
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 160 RPLAVVLSNVWVNWLIGGGRG 98
R LA++L W WL GGG G
Sbjct: 13 RRLALILCLAWALWLHGGGGG 33
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,351,190
Number of Sequences: 37544
Number of extensions: 293447
Number of successful extensions: 946
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -