Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H09
         (495 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...   116   4e-28
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    22   10.0 

>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score =  116 bits (279), Expect = 4e-28
 Identities = 67/155 (43%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
 Frame = +1

Query: 10  QPTRDLSRFGAMAEIYSHPASKGCVTA--SSPPCRRQSTSSPRH*IKPQPKVCSRSWRNT 183
           QP RDLSRF    +       +  +      PP   Q T +     KP  +   + W+  
Sbjct: 52  QPKRDLSRFVKWPKYIRIQRHRAILQKRLKIPPPINQFTQTLD---KPTAQQVMKCWKKY 108

Query: 184 GQKLRHFRXXXXXXXXXXXXXXXXXXXXXRPNTLRAGTNTVTKLVEKKKAQLVVIAHDVD 363
             +    R                     R N LR G N+V K+VE+KKAQLV+IAHDVD
Sbjct: 109 RPENPIARVQRLKAKAEAKAAGKEEPPSKRANQLRQGINSVVKMVEQKKAQLVIIAHDVD 168

Query: 364 PIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRK 468
           PIELV++LPALCRKMGVPYCI+KGK+RLG LV+RK
Sbjct: 169 PIELVVYLPALCRKMGVPYCIIKGKARLGTLVYRK 203


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 22.2 bits (45), Expect = 10.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 97  PPCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKL 195
           P  RR    SP H  KP+ +   R W+  GQ L
Sbjct: 226 PQQRRFHRQSPAHRRKPRWRRAGRRWK-VGQFL 257


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,036
Number of Sequences: 2352
Number of extensions: 10200
Number of successful extensions: 13
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43977336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)