Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H09
(495 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 101 4e-22
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 101 4e-22
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 54 4e-08
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 44 5e-05
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 43 1e-04
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 39 0.002
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 30 0.80
Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 27 5.7
U80031-5|AAB37615.1| 547|Caenorhabditis elegans Hypothetical pr... 27 7.5
U21319-3|AAC46671.2| 265|Caenorhabditis elegans Hypothetical pr... 27 9.9
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 101 bits (241), Expect = 4e-22
Identities = 44/66 (66%), Positives = 56/66 (84%)
Frame = +1
Query: 271 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG
Sbjct: 133 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192
Query: 451 ALVHRK 468
+V RK
Sbjct: 193 TVVRRK 198
Score = 44.4 bits (100), Expect = 5e-05
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +3
Query: 102 LPPPINQFTQTLDKTTAKGLFKILEKYRPE-TEAFQER 212
+PP INQF LD +A+ FK+L+KYRPE TEA + R
Sbjct: 77 VPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNR 114
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 38 VRWPKYIRIQRQKAVLQRPLP-PAAANQ 118
V+WPKYIR+QRQ A+LQ+ L P NQ
Sbjct: 56 VKWPKYIRLQRQSAILQKRLKVPPTINQ 83
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 101 bits (241), Expect = 4e-22
Identities = 44/66 (66%), Positives = 56/66 (84%)
Frame = +1
Query: 271 RPNTLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
RPNT+R G NT+T+LVE ++AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172
Query: 451 ALVHRK 468
+V RK
Sbjct: 173 TVVRRK 178
Score = 43.2 bits (97), Expect = 1e-04
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +3
Query: 102 LPPPINQFTQTLDKTTAKGLFKILEKYRPETEAFQER 212
+PP INQF LD +A+ FK+L+KYRPE+ +R
Sbjct: 77 VPPTINQFRTALDSQSARQAFKLLDKYRPESTEVTKR 113
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 38 VRWPKYIRIQRQKAVLQRPLP-PAAANQ 118
V+WPKYIR+QRQ A+LQ+ L P NQ
Sbjct: 56 VKWPKYIRLQRQSAILQKRLKVPPTINQ 83
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 54.4 bits (125), Expect = 4e-08
Identities = 22/56 (39%), Positives = 36/56 (64%)
Frame = +1
Query: 283 LRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 450
L+ G N TK + + ++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 44.4 bits (100), Expect = 5e-05
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +1
Query: 280 TLRAGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-AL 456
TLR G V K + + + + ++A +V PI++ +P +C + +PY + + +LG A+
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAV 127
Query: 457 VHRK 468
HR+
Sbjct: 128 GHRR 131
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Frame = +3
Query: 102 LPPPINQFTQTLDKTTAKGLFKILEKYRPETEAFQE---RASKESR 230
+PP INQF LD +A+ FK+L+KYRPE+ ++ RA E+R
Sbjct: 180 VPPTINQFRTALDSHSARQAFKLLDKYRPESSEAKKNRLRARAEAR 225
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 38 VRWPKYIRIQRQKAVLQRPLP-PAAANQ 118
V+WPKYIR+QRQ A+LQ+ L P NQ
Sbjct: 159 VKWPKYIRLQRQSAILQKRLKVPPTINQ 186
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 38.7 bits (86), Expect = 0.002
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Frame = +2
Query: 38 VRWPKYIRIQRQKAVLQRPLP-PAAANQ 118
V+WPKYIR+QRQ A+LQ+ L P NQ
Sbjct: 159 VKWPKYIRLQRQSAILQKRLKVPPTINQ 186
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 30.3 bits (65), Expect = 0.80
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 32 VSVRWPKYIRIQRQKAVLQRPLPPAAA-NQPVHPDI 136
+ V P Y +++ K+V Q P+PPA++ + P P I
Sbjct: 1598 IEVTVPSYFPVEQSKSVTQAPIPPASSPSAPSIPSI 1633
>Z99171-4|CAB16313.1| 722|Caenorhabditis elegans Hypothetical
protein F47G4.4 protein.
Length = 722
Score = 27.9 bits (59), Expect = 4.3
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +1
Query: 7 RQPTRDLSRFGAMAEIY---SHPASKGCVTASSPPCRRQSTSS 126
R+P+ +++ + IY S PA + TAS P RRQ+++S
Sbjct: 499 RRPSPSVAKKTSPPSIYAITSSPAKRASSTASGPTARRQNSTS 541
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = -3
Query: 466 YGVQAHPIVIYPSRYSTGLPS 404
YGV+A P+V YP+ STGL S
Sbjct: 155 YGVKA-PVVSYPTSVSTGLSS 174
>U80031-5|AAB37615.1| 547|Caenorhabditis elegans Hypothetical
protein B0554.2 protein.
Length = 547
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 482 RSCKSLRCTSAPNRDLPFTIQYG 414
RS S+ CT A N LP +I YG
Sbjct: 178 RSMNSITCTQAENPCLPTSITYG 200
>U21319-3|AAC46671.2| 265|Caenorhabditis elegans Hypothetical
protein C30G12.2 protein.
Length = 265
Score = 26.6 bits (56), Expect = 9.9
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = -3
Query: 229 RLSLDALS*NASVSGLYFSKILNRPLAVVLSNVWVNWLIGGGRGERTL*HSLLTLDANIF 50
R+S AL+ A S + SK L WV +GG + + S TL ANI
Sbjct: 188 RMSKSALNAFARQSFMELSKY--HILVTSFCPGWVRTDMGGDNADLDVNESTKTLSANIL 245
Query: 49 RPSHRN 32
R +RN
Sbjct: 246 RLDNRN 251
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,437
Number of Sequences: 27780
Number of extensions: 219024
Number of successful extensions: 641
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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