Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H08
         (220 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm rece...    27   1.4  
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    26   4.2  
U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine rece...    25   5.5  
U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.        25   5.5  
U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4...    25   5.5  
AF099923-4|AAC68808.2|  303|Caenorhabditis elegans Hypothetical ...    25   5.5  
AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine re...    25   5.5  
AF047657-5|AAK18949.1|  335|Caenorhabditis elegans Serpentine re...    25   5.5  
Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine rece...    25   7.3  
AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine re...    25   7.3  
Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine r...    25   9.6  

>AF022978-9|AAG24185.1|  353|Caenorhabditis elegans Seven tm
           receptor protein 256 protein.
          Length = 353

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 111 DNIILCSFLLFNIHLWFCLRDLGGIAFIYTSG 206
           +N  L SF  + I LWF +  L G+AF+ T G
Sbjct: 117 NNPHLKSFDSWKIVLWFMIPALNGLAFMCTGG 148


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 130 VFYYLIFICGSVYAI*AESHLY 195
           ++Y + F+CG +Y +  ESHLY
Sbjct: 96  LYYTISFVCG-LYLVLHESHLY 116


>U80028-2|AAN73869.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein88 protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 138 LFNIHLWFCLRDL 176
           LFN H+W CL D+
Sbjct: 65  LFNFHVWTCLADV 77


>U34596-1|AAA97605.1|  570|Caenorhabditis elegans SMA-4 protein.
          Length = 570

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 9   GNKAVPR---GRV*TWTPVVIGQIVDLIRCSTYDLF*DNIIL 125
           G K VP     R+  W  V   ++V L++C T     DNI +
Sbjct: 218 GRKGVPHVVYARIWRWPKVSKNELVKLVQCQTSSDHPDNICI 259


>U00066-5|AAA50739.2|  565|Caenorhabditis elegans Small protein 4,
           isoform a protein.
          Length = 565

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 9   GNKAVPR---GRV*TWTPVVIGQIVDLIRCSTYDLF*DNIIL 125
           G K VP     R+  W  V   ++V L++C T     DNI +
Sbjct: 213 GRKGVPHVVYARIWRWPKVSKNELVKLVQCQTSSDHPDNICI 254


>AF099923-4|AAC68808.2|  303|Caenorhabditis elegans Hypothetical
           protein H09G03.1 protein.
          Length = 303

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 117 IILCSFLLFNIHLWFCLRDLGGIA 188
           I+L S LLF +HL F   ++GG++
Sbjct: 39  ILLISKLLFKLHLKFQSLEIGGLS 62


>AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein87 protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 138 LFNIHLWFCLRDL 176
           LFN H+W CL D+
Sbjct: 65  LFNFHVWTCLADV 77


>AF047657-5|AAK18949.1|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein241 protein.
          Length = 335

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +3

Query: 135 LLFNIHLWFCLRDL 176
           L+ N+H W CL DL
Sbjct: 58  LMLNLHFWSCLSDL 71


>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 138 LFNIHLWFCLRDLGGIAFIYT 200
           + N+HL+ CL DL G++F+ T
Sbjct: 55  MMNVHLFSCLLDL-GLSFLTT 74


>U55373-2|AAX88832.1|  349|Caenorhabditis elegans Serpentine
           receptor, class h protein76, isoform b protein.
          Length = 349

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 141 FNIHLWFCLRDL 176
           FN+H+W CL+ L
Sbjct: 70  FNMHIWMCLQSL 81


>AF047657-6|AAK18946.1|  337|Caenorhabditis elegans Serpentine
           receptor, class h protein243 protein.
          Length = 337

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
 Frame = +3

Query: 132 FLLFNIHLWFCLRDLG----GIAFIY 197
           FL+ N+H W  L DL     GI F+Y
Sbjct: 56  FLILNLHFWNTLSDLFLCFIGIPFLY 81


>Z70309-6|CAA94360.1|  324|Caenorhabditis elegans Hypothetical
           protein R102.6 protein.
          Length = 324

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 97  MICFKIILFYVVFYYLIFIC 156
           MICF++ +  VV+   ++IC
Sbjct: 164 MICFEVYMLSVVWRAFVYIC 183


>AF022981-10|AAG24203.1|  360|Caenorhabditis elegans Serpentine
           receptor, class h protein82 protein.
          Length = 360

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 138 LFNIHLWFCLRDL 176
           LFN H W CL D+
Sbjct: 65  LFNFHFWTCLVDI 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,893,240
Number of Sequences: 27780
Number of extensions: 75572
Number of successful extensions: 247
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 12,740,198
effective HSP length: 52
effective length of database: 11,295,638
effective search space used: 225912760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)