Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H07
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0555 - 10588685-10592038 28 3.8
12_02_0943 - 24662147-24662195,24662440-24662834,24662979-246630... 27 5.0
09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555 27 5.0
03_02_1029 - 13488535-13493037 27 5.0
03_02_1026 + 13313672-13313876,13341211-13342005,13363815-133638... 27 5.0
01_04_0136 + 16506747-16506982,16507128-16507728,16510443-165108... 27 5.0
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 27 6.6
02_05_1303 + 35572403-35572624,35572744-35572860,35572987-355731... 27 6.6
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644 27 8.7
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 27.9 bits (59), Expect = 3.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 163 LAPKVTVKL*RPFRSTGLARFEKKKQKPETSERQSYRNTTAP 288
LAP +T RP+R E KKQ E E+ R +T+P
Sbjct: 174 LAPGITPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSP 215
>12_02_0943 -
24662147-24662195,24662440-24662834,24662979-24663057,
24663129-24663250,24663363-24663449,24663543-24663891,
24664227-24664540
Length = 464
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 78 KTQYHLTRPGNRTRDLSASHLLRL 149
KTQ HL RP N L AS + RL
Sbjct: 293 KTQQHLDRPSNGINSLVASFIKRL 316
>09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555
Length = 383
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 163 LAPKVTVKL*RPFRSTGLARFEKKKQKPETSERQSYRNTTAP 288
LAP T RP+R E KKQ E E+ R +T+P
Sbjct: 115 LAPGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSP 156
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 163 LAPKVTVKL*RPFRSTGLARFEKKKQKPETSERQSYRNTTAP 288
LAP T RP+R E KKQ E E+ R +T+P
Sbjct: 557 LAPGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSP 598
>03_02_1026 +
13313672-13313876,13341211-13342005,13363815-13363855,
13363967-13364140
Length = 404
Score = 27.5 bits (58), Expect = 5.0
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 163 LAPKVTVKL*RPFRSTGLARFEKKKQKPETSERQSYRNTTAP 288
LAP T RP+R E KKQ E E+ R +T+P
Sbjct: 139 LAPGTTPLYKRPYRMAANELAEVKKQLEELKEKGYIRPSTSP 180
>01_04_0136 +
16506747-16506982,16507128-16507728,16510443-16510842,
16513595-16513709,16513776-16514352
Length = 642
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 278 QLRHRDSIWVLILFINFKHLIKLTANI-KHKIVHNKNRRPFTSFHIY 415
QL + +I + L +FKH++ + ++ ++ +VH+ N+ FH +
Sbjct: 384 QLVNEHAISSVSLCADFKHVVHIANDVEEYVLVHHNNKEVVMDFHAF 430
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.1 bits (57), Expect = 6.6
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = -2
Query: 233 FFSNL-ANPVDRKGLYSFTVTLGASTEGTKSQKVTSTEVSGSIPGSGQVILGFSNQYRPG 57
FFS L ++ DR+G S G + +G K ++ +G G G +L +
Sbjct: 38 FFSELRSSQPDRRGAASDHAGGGGAPDGRGKAKSSAPAAAGGDAGGGGKLLSTGTEKHDY 97
Query: 56 VWNLCPIWRQARPLSHP 6
W L P A PL P
Sbjct: 98 DWLLTP---PASPLWSP 111
>02_05_1303 +
35572403-35572624,35572744-35572860,35572987-35573112,
35573217-35573279,35573837-35573944,35574587-35574664,
35574772-35574864,35575206-35575292,35575429-35575530,
35575617-35575736,35575839-35575901,35575974-35576119,
35576203-35576296,35576399-35576457,35576568-35576607,
35576694-35576785,35576877-35576946,35578172-35578333,
35578477-35578703,35578863-35579070,35579173-35579258,
35579450-35579541,35579674-35579870
Length = 883
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -2
Query: 110 IPG-SGQVILGFSNQYRPGVWNLCPIWRQARPL 15
IPG + + G S YRPG W P+ RPL
Sbjct: 345 IPGLNAPIPPGASFGYRPGEWGKPPVDEHGRPL 377
>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
Length = 581
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 163 LAPKVTVKL*RPFRSTGLARFEKKKQKPETSERQSYRNTTAP 288
LAP T RP+R E KKQ E E+ R +T+P
Sbjct: 13 LAPGTTPLHKRPYRMAANELAEVKKQLEELKEKGYIRPSTSP 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,695,885
Number of Sequences: 37544
Number of extensions: 220648
Number of successful extensions: 529
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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