Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H07
         (438 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.            30   4.0  
AK128153-1|BAC87301.1|  126|Homo sapiens protein ( Homo sapiens ...    29   7.0  

>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
          Length = 3570

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
 Frame = -2

Query: 227 SNLANPVDRKGLYS--FTVTLGASTEGTKSQKVTSTEVSGSIPGSGQVILGFSNQYRPGV 54
           S  A P   +GL S  +T TLG +T G   Q   STE   ++PG     L  +    PG 
Sbjct: 322 STTAVPTLSEGLTSPRYTSTLGTATTGGPRQSAGSTE--PTVPGVATSTLP-TRSALPGT 378

Query: 53  WNLCPIWRQARP 18
                 WR ++P
Sbjct: 379 TGSLGTWRPSQP 390


>AK128153-1|BAC87301.1|  126|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46276 fis, clone TESTI4029676. ).
          Length = 126

 Score = 29.1 bits (62), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 107 PGSGQVILGFSNQYRPGVWNLCPIWRQARPLSH 9
           PG G  ++G SN  R G W+    W + R ++H
Sbjct: 64  PGCGHPLVGASNGARRGAWH-AKSWHRVRAVTH 95


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,247,015
Number of Sequences: 237096
Number of extensions: 1315672
Number of successful extensions: 2778
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2767
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3545165828
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)