Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H07
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   2.6  
U88314-12|AAF99880.1|   65|Caenorhabditis elegans Hypothetical p...    27   4.5  
U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF106583-11|AAD03138.2|  129|Caenorhabditis elegans Hypothetical...    27   7.9  
AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical ...    27   7.9  

>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 223  FEKKKQKPETSERQSYRNTTAPPRQYL 303
            F K  +KP T+E+  YR + APP  +L
Sbjct: 1146 FNKPDEKPLTTEQVIYRVSAAPPGHHL 1172


>U88314-12|AAF99880.1|   65|Caenorhabditis elegans Hypothetical
           protein C46H11.1 protein.
          Length = 65

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 223 FEKKKQKPETSERQSYRNTTAPPRQYLGAYFIY*F*TFNKT 345
           F +KK+  E+ +R    N    PR  LG  FI+   + NKT
Sbjct: 14  FHEKKKMDESYQRNGRTNLEHVPRLKLGKLFIFISASTNKT 54


>U41559-1|AAC24260.1|  373|Caenorhabditis elegans Hypothetical
           protein C26B2.8 protein.
          Length = 373

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 82  VFLISIVPESGICARYGDRL 23
           VF++ ++P +G+CARY   L
Sbjct: 60  VFIMLLLPAAGLCARYNSHL 79


>Z70037-1|CAA93878.1|  493|Caenorhabditis elegans Hypothetical
           protein T27D12.1 protein.
          Length = 493

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 397 KWPSIFIVYNFMLYISCKFY*MFKINK*NKHP 302
           KWPSIF  +  +  +    Y +F  N   KHP
Sbjct: 195 KWPSIFYAHGAVSLLLFVTYALFYRNSPQKHP 226


>AF106583-11|AAD03138.2|  129|Caenorhabditis elegans Hypothetical
           protein F23C8.1 protein.
          Length = 129

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +2

Query: 224 SKKKNKNPRPQNDSRTVIQLRHRDSIWVLILF--INFKHLIKLTANIKHKIVHNKNRRPF 397
           SKK +     Q      + +  +++I+ +  F  +N ++ IKL   +  KI+H   + P 
Sbjct: 45  SKKPDAKQGMQGGGMLKMLIDEKETIFYIKAFTGLNEENAIKLNELVVCKILHRMGKGPN 104

Query: 398 TSFHIYNRKKRK 433
             F+I N   +K
Sbjct: 105 YWFYINNHFSKK 116


>AF003385-2|AAB54249.1|  773|Caenorhabditis elegans Hypothetical
           protein R08F11.7 protein.
          Length = 773

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 158 QYSPPKSR*SCKGP 199
           +YSPPKS  +C+GP
Sbjct: 181 EYSPPKSNATCQGP 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,140,629
Number of Sequences: 27780
Number of extensions: 201442
Number of successful extensions: 595
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)