Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H06
         (146 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-9|CAC51067.1|  256|Caenorhabditis elegans Hypothetical ...    27   1.8  
U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine rece...    26   3.2  
Z81575-4|CAB04630.1|  320|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>AL132948-9|CAC51067.1|  256|Caenorhabditis elegans Hypothetical
           protein Y39B6A.10 protein.
          Length = 256

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/29 (44%), Positives = 21/29 (72%)
 Frame = +3

Query: 27  RSVVKFQIFYYKSKLFLRIKFIFPKIEIV 113
           R V +FQIF  KS++ LRI++   K++I+
Sbjct: 142 RDVTEFQIFAQKSEVPLRIQYKKRKLKIL 170


>U80030-8|AAG24166.2|  375|Caenorhabditis elegans Serpentine
          receptor, class w protein112 protein.
          Length = 375

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 32 CSKISDFLLQIEIVSKNKIYI 94
          CS ++DF+  +++V+K+K YI
Sbjct: 23 CSFLNDFVNFVDVVNKHKFYI 43


>Z81575-4|CAB04630.1|  320|Caenorhabditis elegans Hypothetical
           protein R08H2.4 protein.
          Length = 320

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 48  IFYYKSKLFLRIKFIFPKIEIVLDWTNIWAQRN 146
           I+++  K++L +  IFP I  +  WT + +Q N
Sbjct: 124 IWHHLRKIYLPLMCIFPPISSLPVWTILPSQEN 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,490,059
Number of Sequences: 27780
Number of extensions: 26613
Number of successful extensions: 87
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 12,740,198
effective HSP length: 29
effective length of database: 11,934,578
effective search space used: 226756982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)