Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H05
(271 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 120 3e-29
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 120 3e-29
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 86 7e-19
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 27 0.46
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l... 25 2.5
SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomy... 24 3.2
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 24 3.2
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 4.3
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 23 5.7
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S... 23 5.7
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo... 23 5.7
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 23 7.5
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 23 7.5
SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo... 23 9.9
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 23 9.9
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 120 bits (290), Expect = 3e-29
Identities = 57/84 (67%), Positives = 63/84 (75%)
Frame = +3
Query: 18 ANILVDCSKGVQYLNEIKDSVVAGFQWADQEGAMAEENLRGVRFNIYDVTLHTDAIHRGG 197
AN++VD +K V YLNEIKDSVVA F WA +EG M EENLR RFNI DV LH DAIHRGG
Sbjct: 643 ANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGG 702
Query: 198 GQIIPTTRRCLYACLLTAQPRLME 269
GQIIPT RR +YA L A P + E
Sbjct: 703 GQIIPTARRVVYASTLLASPIIQE 726
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 120 bits (290), Expect = 3e-29
Identities = 57/84 (67%), Positives = 63/84 (75%)
Frame = +3
Query: 18 ANILVDCSKGVQYLNEIKDSVVAGFQWADQEGAMAEENLRGVRFNIYDVTLHTDAIHRGG 197
AN++VD +K V YLNEIKDSVVA F WA +EG M EENLR RFNI DV LH DAIHRGG
Sbjct: 643 ANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLHADAIHRGG 702
Query: 198 GQIIPTTRRCLYACLLTAQPRLME 269
GQIIPT RR +YA L A P + E
Sbjct: 703 GQIIPTARRVVYASTLLASPIIQE 726
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 86.2 bits (204), Expect = 7e-19
Identities = 40/79 (50%), Positives = 51/79 (64%)
Frame = +3
Query: 33 DCSKGVQYLNEIKDSVVAGFQWADQEGAMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIP 212
D K V LN +K+ + GFQW +EG + +E +R V F + DV L + I+RGGGQIIP
Sbjct: 766 DVDKNV--LNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDVVLAPEQIYRGGGQIIP 823
Query: 213 TTRRCLYACLLTAQPRLME 269
T RR Y+ LTA PRLME
Sbjct: 824 TARRVCYSSFLTASPRLME 842
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 27.1 bits (57), Expect = 0.46
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 139 PLKFSSAMAPSWSAHWNPATTESLISFRYCTPLEQS 32
P K + ++ P WSA W+ +T+S+ + Y P+ Q+
Sbjct: 811 PTKATHSVLP-WSAMWSIISTQSVRTMFYNEPIHQN 845
>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
ligase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 788
Score = 24.6 bits (51), Expect = 2.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 156 YDVTLHTDAIHRGGGQIIPTTRRCLYACL 242
+DV + D + G G IIP T++ + L
Sbjct: 146 FDVVIKADGLAAGKGVIIPKTKKEAFEAL 174
>SPBC1347.08c |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 24.2 bits (50), Expect = 3.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 104 VGPLEPGDDRVL--DLVQVLHTLRAVDEDVSLVPKT 3
+GP P VL +L+ LH + V+E V +PKT
Sbjct: 108 MGPHYPRVSEVLSPNLLNTLHRICKVNEPVGSLPKT 143
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 24.2 bits (50), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 54 YLNEIKDSVVAGFQWADQEGAMAEENLRGVR 146
YL+ + +AGFQ G ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.8 bits (49), Expect = 4.3
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = -3
Query: 209 NDLTATSVNGVSVKGDVINVESNPSQVL-----LGHGAFLVGPLEPGDDRVL 69
+ + T+ NG+ + D +N+ + + L H F G +E G R++
Sbjct: 427 SSVLTTAWNGIQINEDAVNINTGTVEPLHMYGVANHDVFRWGAIENGTARLI 478
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 23.4 bits (48), Expect = 5.7
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = -3
Query: 266 HKPGLRGQQTRVQASPSRRNDLTATSVNGVSVKGDVINVESNP 138
H+ L+G+ RV + N +T VN SVK + + + P
Sbjct: 77 HQGPLKGKWGRVVETNKYTNGITIEGVNVRSVKVPIFLLRNKP 119
>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
E|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 23.4 bits (48), Expect = 5.7
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -1
Query: 97 HWNPATTESLISFRYCTPLEQSTRMLASCRK 5
+W ++LIS+ + P+ ST + AS +
Sbjct: 445 NWKLLDIKALISYHFAIPVHTSTFVFASSER 475
>SPAPB17E12.10c |||SAM-dependent
methyltransferase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 23.4 bits (48), Expect = 5.7
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +3
Query: 3 SFRHEANILVDCSKGVQYLNEIKDSVVA 86
SF + ++ C K +Q+ +IKD + A
Sbjct: 256 SFAEDLSMCFKCVKKIQFKTKIKDELYA 283
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 154 FMTSPFTLTPFTEVAVKSFLRLG 222
F PF ++PFT + + L++G
Sbjct: 431 FALPPFLMSPFTGTVLFNMLKIG 453
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 23.0 bits (47), Expect = 7.5
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -1
Query: 109 SWSAHWNPA 83
SWS WNPA
Sbjct: 462 SWSTRWNPA 470
>SPBC19F8.02 |||nuclear distribution protein NUDC
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -3
Query: 137 SQVLLGHGAFLVGPLEPGDDRVLDL 63
S V+ GH + +G +EP + ++ DL
Sbjct: 94 SCVIKGHPSIDIGSIEPENSKLSDL 118
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 39 SKGVQYLNEIKDSVVAGFQW 98
SK + NEI++ VA F+W
Sbjct: 42 SKRLYVANEIEEGYVAVFEW 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 933,590
Number of Sequences: 5004
Number of extensions: 14816
Number of successful extensions: 56
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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