Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H05
(271 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 142 2e-35
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 142 2e-35
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 88 9e-19
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 88 9e-19
Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical pr... 27 1.4
Z79754-6|CAB02095.1| 368|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical pr... 25 5.6
U23139-14|AAK31487.1| 301|Caenorhabditis elegans Hypothetical p... 25 5.6
AC006723-3|AAF59427.1| 881|Caenorhabditis elegans Hypothetical ... 25 5.6
AC006701-3|AAF60394.2| 198|Caenorhabditis elegans Mediator prot... 25 5.6
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 25 7.3
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 25 7.3
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 25 7.3
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 25 7.3
AC006723-4|AAK68423.1| 341|Caenorhabditis elegans Hypothetical ... 25 7.3
Z66512-9|CAA91328.3| 253|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z48638-12|CAA88573.3| 253|Caenorhabditis elegans Hypothetical p... 25 9.7
U41749-4|AAP82658.1| 109|Caenorhabditis elegans Hypothetical pr... 25 9.7
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 25 9.7
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 25 9.7
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 142 bits (345), Expect = 2e-35
Identities = 62/83 (74%), Positives = 75/83 (90%)
Frame = +3
Query: 21 NILVDCSKGVQYLNEIKDSVVAGFQWADQEGAMAEENLRGVRFNIYDVTLHTDAIHRGGG 200
N+L+D +KGVQYLNEIKDSVVAGFQWA +EG +++EN+RGVRFN++DVTLH DAIHRGGG
Sbjct: 654 NLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGG 713
Query: 201 QIIPTTRRCLYACLLTAQPRLME 269
QIIPT RR YA +LTA+PRL+E
Sbjct: 714 QIIPTARRVFYASVLTAEPRLLE 736
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 142 bits (345), Expect = 2e-35
Identities = 62/83 (74%), Positives = 75/83 (90%)
Frame = +3
Query: 21 NILVDCSKGVQYLNEIKDSVVAGFQWADQEGAMAEENLRGVRFNIYDVTLHTDAIHRGGG 200
N+L+D +KGVQYLNEIKDSVVAGFQWA +EG +++EN+RGVRFN++DVTLH DAIHRGGG
Sbjct: 654 NLLMDVTKGVQYLNEIKDSVVAGFQWATREGVLSDENMRGVRFNVHDVTLHADAIHRGGG 713
Query: 201 QIIPTTRRCLYACLLTAQPRLME 269
QIIPT RR YA +LTA+PRL+E
Sbjct: 714 QIIPTARRVFYASVLTAEPRLLE 736
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 87.8 bits (208), Expect = 9e-19
Identities = 36/71 (50%), Positives = 52/71 (73%)
Frame = +3
Query: 57 LNEIKDSVVAGFQWADQEGAMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 236
L+ +++S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 763 LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 822
Query: 237 CLLTAQPRLME 269
L A PRLME
Sbjct: 823 AFLMATPRLME 833
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 87.8 bits (208), Expect = 9e-19
Identities = 36/71 (50%), Positives = 52/71 (73%)
Frame = +3
Query: 57 LNEIKDSVVAGFQWADQEGAMAEENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYA 236
L+ +++S+V GFQWA +EG + EE +R V+F + D + T+ ++RGGGQ+IPT RRC Y+
Sbjct: 638 LSTVRESLVQGFQWATREGPLCEEPIRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYS 697
Query: 237 CLLTAQPRLME 269
L A PRLME
Sbjct: 698 AFLMATPRLME 708
>Z46794-3|CAA86783.1| 429|Caenorhabditis elegans Hypothetical
protein R06F6.4 protein.
Length = 429
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 123 EENLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQ 254
+ NL +++ TLH +HR IP R CLY C L AQ
Sbjct: 309 KRNLCEKLLDLFQDTLHDHNVHR-----IPVLR-CLYICSLAAQ 346
>Z79754-6|CAB02095.1| 368|Caenorhabditis elegans Hypothetical
protein F25H2.7 protein.
Length = 368
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 27 LVDCSKGVQYLN-EIKDSVVAGFQWADQEGAMAEEN 131
L CSKGV YLN KDS + D+ EN
Sbjct: 316 LTRCSKGVAYLNWRYKDSFIGSIIDVDRNILSTIEN 351
>Z75542-2|CAA99862.2| 712|Caenorhabditis elegans Hypothetical
protein F55D12.2 protein.
Length = 712
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +3
Query: 33 DCSKGVQYLNEIKDSVVAGFQWADQEGAMAEENLRGVRFNI 155
DC + +++L E+K+++ + +D + A +NLR R N+
Sbjct: 451 DCDQAIKWLGELKETLHKEYSLSDID-EDAVKNLRNDRQNL 490
>Z46242-1|CAA86325.2| 396|Caenorhabditis elegans Hypothetical
protein F35G12.2 protein.
Length = 396
Score = 25.4 bits (53), Expect = 5.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 239 TRVQASPSRRNDLTATSVNGVSVKGDVINVESNPSQV 129
++ AS +TA NGV++KG++ NPS V
Sbjct: 90 SKEDASEDLAEAITAIKRNGVALKGNIETKFDNPSFV 126
>U23139-14|AAK31487.1| 301|Caenorhabditis elegans Hypothetical
protein F13H8.6 protein.
Length = 301
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Frame = -3
Query: 260 PGLRGQQTRVQA---SPSRRNDLTATSVNGVSVKGDV---INVESNPSQVLLG 120
PGL +Q S NDL A +++ ++ KG++ I E++ S++L G
Sbjct: 75 PGLGNVSNLIQVRSLEQSMENDLNAITLSEINGKGEIVPYIKPETDQSKILAG 127
>AC006723-3|AAF59427.1| 881|Caenorhabditis elegans Hypothetical
protein Y19D10B.4 protein.
Length = 881
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 164 DVINVESNPSQVLLGHGAFLVGPLEPGDDRVLDLVQVLHTLRA 36
+VI V+ P V +G+G L+ D DLV +L T+R+
Sbjct: 288 NVIGVQYFPENVQIGYGKTTDEQLQTYVDNDGDLVYILLTIRS 330
>AC006701-3|AAF60394.2| 198|Caenorhabditis elegans Mediator protein
20 protein.
Length = 198
Score = 25.4 bits (53), Expect = 5.6
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 194 TSVNGVSVKGDVINVESNPSQVLL 123
T+ G +VKG V+ +E +PS +++
Sbjct: 121 TATQGTTVKGVVVEIEYDPSIIVI 144
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 174 TDAIHRGGGQIIPTTRRCLY 233
TD IH GGGQ+ T L+
Sbjct: 209 TDLIHHGGGQLDAKTMNALH 228
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 174 TDAIHRGGGQIIPTTRRCLY 233
TD IH GGGQ+ T L+
Sbjct: 569 TDLIHHGGGQLDAKTMNALH 588
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 145 RTPLKFSSAMAPSWSAHWN-PATTESLISFR 56
+T +K MAP W+ H N A S ISFR
Sbjct: 62 KTTVK-KKTMAPEWNEHLNVHANESSTISFR 91
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -1
Query: 145 RTPLKFSSAMAPSWSAHWN-PATTESLISFR 56
+T +K MAP W+ H N A S ISFR
Sbjct: 62 KTTVK-KKTMAPEWNEHLNVHANESSTISFR 91
>AC006723-4|AAK68423.1| 341|Caenorhabditis elegans Hypothetical
protein Y19D10B.1 protein.
Length = 341
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -3
Query: 161 VINVESNPSQVLLGHGAFLVGPLEPGDDRVLDLVQVLHTLRA 36
VI V+ P V +G+G L+ D DLV +L T+R+
Sbjct: 97 VIGVQYFPENVQIGYGKTTDEQLQTYVDNDGDLVYILLTIRS 138
>Z66512-9|CAA91328.3| 253|Caenorhabditis elegans Hypothetical
protein ZK892.5 protein.
Length = 253
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 245 QQTRVQASPSRRNDLTATSVNGVSVKGDV 159
Q+ VQA + D+T T+ + VKG+V
Sbjct: 222 QKKTVQAQINENADVTVTTSGAMDVKGEV 250
>Z48638-12|CAA88573.3| 253|Caenorhabditis elegans Hypothetical
protein ZK892.5 protein.
Length = 253
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 245 QQTRVQASPSRRNDLTATSVNGVSVKGDV 159
Q+ VQA + D+T T+ + VKG+V
Sbjct: 222 QKKTVQAQINENADVTVTTSGAMDVKGEV 250
>U41749-4|AAP82658.1| 109|Caenorhabditis elegans Hypothetical
protein F09E10.7a protein.
Length = 109
Score = 24.6 bits (51), Expect = 9.7
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 15 EANILVDCSKGVQYLNEIKDSVVAGFQWADQEGAMAEENLRGVRFNIY 158
EA D + GVQ I + V G WA + G+ + +G Y
Sbjct: 37 EAYFKEDMADGVQTAQIITEEVNGGGDWAFERGSYHLDGTKGRESGAY 84
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
protein ZK688.5b protein.
Length = 1595
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 263 KPGLRGQQTRVQASPSRRNDLTATSVNGVSVK 168
+PG+ G + RV A P RR T V V+
Sbjct: 602 QPGIEGGRVRVTARPGRRFVATTGDAPSVPVE 633
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
protein ZK688.5a protein.
Length = 1620
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 263 KPGLRGQQTRVQASPSRRNDLTATSVNGVSVK 168
+PG+ G + RV A P RR T V V+
Sbjct: 602 QPGIEGGRVRVTARPGRRFVATTGDAPSVPVE 633
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,260,814
Number of Sequences: 27780
Number of extensions: 85953
Number of successful extensions: 300
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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