Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H04
         (305 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1763 - 29316969-29318120                                         27   2.2  
10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010           26   6.7  
04_04_1436 + 33591570-33591728,33594027-33594101,33594487-335945...    26   6.7  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    26   6.7  
02_05_1305 - 35586499-35586601,35586963-35587034,35587111-355872...    26   6.7  
01_01_1096 - 8659091-8659459,8660730-8661050,8661416-8661694,866...    26   6.7  

>07_03_1763 - 29316969-29318120
          Length = 383

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 141 LCCNPQTAVARAKNITIFILYDY 73
           LC  P   +A A N T++ LYDY
Sbjct: 119 LCGGPNITMAMADNKTMYALYDY 141


>10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010
          Length = 520

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = -2

Query: 229 ISLANGTRDFEEVVNTHVIIRPTVLYSQSVVL*STNGRGKSEEYNDLH 86
           +S+AN  R+F+  VNT  +++  V   +++ + + N   +S + +  H
Sbjct: 187 LSMANRKREFQPHVNTVSVVKQVVSQQKNMSIRNGNCLDESRKVSQQH 234


>04_04_1436 +
           33591570-33591728,33594027-33594101,33594487-33594543,
           33594635-33594795,33594954-33595094,33595344-33595446,
           33595535-33595634,33595745-33595983
          Length = 344

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 286 HD*LRNRAWSSTYLPPSFTISLANGTRDFEEVVNTH 179
           H   RNR WS    PP F +  +N  + + +++ TH
Sbjct: 107 HGFARNRTWSVENDPPPFPVPTSN--KAYVDLILTH 140


>03_02_0584 -
           9650996-9651488,9651630-9652049,9652129-9652158,
           9652201-9652287,9652657-9653669,9653832-9654854,
           9654946-9654969
          Length = 1029

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 177 LSSDQPYFTLSPLCCNPQTA 118
           +S+ QP     P CCNP  A
Sbjct: 484 VSASQPSLPTEPACCNPDEA 503


>02_05_1305 -
           35586499-35586601,35586963-35587034,35587111-35587232,
           35587767-35587826,35587919-35587997,35588219-35588307,
           35588405-35588492,35591761-35591821,35592546-35592890,
           35593094-35594351
          Length = 758

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 185 HPRYHPTNRTLL 150
           HPR+HPT R+LL
Sbjct: 77  HPRHHPTARSLL 88


>01_01_1096 -
           8659091-8659459,8660730-8661050,8661416-8661694,
           8661781-8661897,8662142-8662210,8663204-8663397,
           8663552-8663633
          Length = 476

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -3

Query: 261 GVRLIFRHPSL*ASLMVRGILKKWSTPTLSSDQPYFTLS 145
           G    F HP      M  GI     +P+++S  PY +L+
Sbjct: 171 GTTCKFHHPEFGGVPMTPGIYPPLQSPSIASPHPYASLA 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,353,172
Number of Sequences: 37544
Number of extensions: 186484
Number of successful extensions: 402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)