Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H04
(305 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sortin... 28 6.1
AL133634-1|CAB63758.1| 266|Homo sapiens hypothetical protein pr... 28 6.1
AK000200-1|BAA91005.1| 240|Homo sapiens protein ( Homo sapiens ... 28 6.1
AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sortin... 28 6.1
AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sortin... 28 6.1
AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein. 28 6.1
AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protei... 28 6.1
AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein. 28 6.1
AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein. 28 6.1
AB353947-1|BAF75364.1| 1257|Homo sapiens ATP-binding cassette, s... 28 6.1
U64315-1|AAB07689.1| 905|Homo sapiens DNA repair endonuclease s... 27 8.1
L77890-1|AAB50174.1| 916|Homo sapiens DNA repair protein protein. 27 8.1
BC142631-1|AAI42632.1| 372|Homo sapiens ERCC4 protein protein. 27 8.1
BC020741-1|AAH20741.1| 356|Homo sapiens Unknown (protein for IM... 27 8.1
AF491814-1|AAL91593.1| 916|Homo sapiens excision repair cross-c... 27 8.1
>BC047932-1|AAH47932.1| 437|Homo sapiens vacuolar protein sorting 4
homolog A (S. cerevisiae) protein.
Length = 437
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 63 RTIPSATIDPRADTCSPGDP 4
RT PS ID CSPGDP
Sbjct: 363 RTNPSMMIDDLLTPCSPGDP 382
>AL133634-1|CAB63758.1| 266|Homo sapiens hypothetical protein
protein.
Length = 266
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 63 RTIPSATIDPRADTCSPGDP 4
RT PS ID CSPGDP
Sbjct: 192 RTNPSMMIDDLLTPCSPGDP 211
>AK000200-1|BAA91005.1| 240|Homo sapiens protein ( Homo sapiens
cDNA FLJ20193 fis, clone COLF0795. ).
Length = 240
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 63 RTIPSATIDPRADTCSPGDP 4
RT PS ID CSPGDP
Sbjct: 166 RTNPSMMIDDLLTPCSPGDP 185
>AF282903-1|AAG01470.1| 437|Homo sapiens vacuolar protein sorting
factor 4A protein.
Length = 437
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 63 RTIPSATIDPRADTCSPGDP 4
RT PS ID CSPGDP
Sbjct: 363 RTNPSMMIDDLLTPCSPGDP 382
>AF255952-1|AAK52408.1| 437|Homo sapiens vacuolar protein sorting
VPS4-1 protein.
Length = 437
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 63 RTIPSATIDPRADTCSPGDP 4
RT PS ID CSPGDP
Sbjct: 363 RTNPSMMIDDLLTPCSPGDP 382
>AF159063-1|AAD49227.1| 437|Homo sapiens SKD1-homolog protein.
Length = 437
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 63 RTIPSATIDPRADTCSPGDP 4
RT PS ID CSPGDP
Sbjct: 363 RTNPSMMIDDLLTPCSPGDP 382
>AF155740-1|AAD42971.1| 432|Homo sapiens vacuolar sorting protein 4
protein.
Length = 432
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 63 RTIPSATIDPRADTCSPGDP 4
RT PS ID CSPGDP
Sbjct: 358 RTNPSMMIDDLLTPCSPGDP 377
>AF132747-1|AAL75948.1| 437|Homo sapiens SKD2 protein protein.
Length = 437
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 63 RTIPSATIDPRADTCSPGDP 4
RT PS ID CSPGDP
Sbjct: 363 RTNPSMMIDDLLTPCSPGDP 382
>AF112215-1|AAF17203.1| 437|Homo sapiens SKD1 protein protein.
Length = 437
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 63 RTIPSATIDPRADTCSPGDP 4
RT PS ID CSPGDP
Sbjct: 363 RTNPSMMIDDLLTPCSPGDP 382
>AB353947-1|BAF75364.1| 1257|Homo sapiens ATP-binding cassette,
sub-family B (MDR/TAP), member 5 protein.
Length = 1257
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = -3
Query: 282 INSGIGPGVRLIFRHPSL*ASLMVRGILKKWS-TPTLSSDQPYFTLSPLCCNPQTAVARA 106
I+ GIG + L+F++ S + + G++K W T S P S C+ +
Sbjct: 174 ISDGIGDKIALLFQNMSTFSIGLAVGLVKGWKLTLVTLSTSPLIMASAAACSRMVISLTS 233
Query: 105 KNITIF 88
K ++ +
Sbjct: 234 KELSAY 239
>U64315-1|AAB07689.1| 905|Homo sapiens DNA repair endonuclease
subunit protein.
Length = 905
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 277 LRNRAWSSTYLPPSFTISLANGTRDFE-EVVNTHVIIRPTVLYSQSVVL 134
+RN YL P F +++ + + EVV HV + PT+L Q+ +L
Sbjct: 171 MRNLFVRKLYLWPRFHVAVNSFLEQHKPEVVEIHVSMTPTMLAIQTAIL 219
>L77890-1|AAB50174.1| 916|Homo sapiens DNA repair protein protein.
Length = 916
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 277 LRNRAWSSTYLPPSFTISLANGTRDFE-EVVNTHVIIRPTVLYSQSVVL 134
+RN YL P F +++ + + EVV HV + PT+L Q+ +L
Sbjct: 182 MRNLFVRKLYLWPRFHVAVNSFLEQHKPEVVEIHVSMTPTMLAIQTAIL 230
>BC142631-1|AAI42632.1| 372|Homo sapiens ERCC4 protein protein.
Length = 372
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 277 LRNRAWSSTYLPPSFTISLANGTRDFE-EVVNTHVIIRPTVLYSQSVVL 134
+RN YL P F +++ + + EVV HV + PT+L Q+ +L
Sbjct: 182 MRNLFVRKLYLWPRFHVAVNSFLEQHKPEVVEIHVSMTPTMLAIQTAIL 230
>BC020741-1|AAH20741.1| 356|Homo sapiens Unknown (protein for
IMAGE:4732192) protein.
Length = 356
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 277 LRNRAWSSTYLPPSFTISLANGTRDFE-EVVNTHVIIRPTVLYSQSVVL 134
+RN YL P F +++ + + EVV HV + PT+L Q+ +L
Sbjct: 171 MRNLFVRKLYLWPRFHVAVNSFLEQHKPEVVEIHVSMTPTMLAIQTAIL 219
>AF491814-1|AAL91593.1| 916|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 916
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = -2
Query: 277 LRNRAWSSTYLPPSFTISLANGTRDFE-EVVNTHVIIRPTVLYSQSVVL 134
+RN YL P F +++ + + EVV HV + PT+L Q+ +L
Sbjct: 182 MRNLFVRKLYLWPRFHVAVNSFLEQHKPEVVEIHVSMTPTMLAIQTAIL 230
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,706,766
Number of Sequences: 237096
Number of extensions: 988256
Number of successful extensions: 1668
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1668
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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