Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H04
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    35   0.010
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    35   0.010
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    35   0.010
Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical pr...    27   3.4  
AC024810-20|AAO21413.1|  137|Caenorhabditis elegans Hypothetical...    26   6.0  
AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical...    26   6.0  
AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical ...    25   7.9  
AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4 prot...    25   7.9  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoformb protein.
          Length = 1437

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 80   YNMKIVIFFALATAVCGLQHNGLR--VKY-GWSDDNVGVDHFFKIPRTISEAYSEGWRKI 250
            ++ K V  F+  +++CG   N     VKY  ++D    ++ FF   RT SE YS  W+++
Sbjct: 1130 FHEKAVKEFSTVSSMCGKMKNDWESLVKYYAFNDKKYPMEEFFADIRTFSEQYSNAWKEL 1189


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
            protein 1, isoforma protein.
          Length = 1435

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 80   YNMKIVIFFALATAVCGLQHNGLR--VKY-GWSDDNVGVDHFFKIPRTISEAYSEGWRKI 250
            ++ K V  F+  +++CG   N     VKY  ++D    ++ FF   RT SE YS  W+++
Sbjct: 1130 FHEKAVKEFSTVSSMCGKMKNDWESLVKYYAFNDKKYPMEEFFADIRTFSEQYSNAWKEL 1189


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = +2

Query: 80  YNMKIVIFFALATAVCGLQHNGLR--VKY-GWSDDNVGVDHFFKIPRTISEAYSEGWRKI 250
           ++ K V  F+  +++CG   N     VKY  ++D    ++ FF   RT SE YS  W+++
Sbjct: 713 FHEKAVKEFSTVSSMCGKMKNDWESLVKYYAFNDKKYPMEEFFADIRTFSEQYSNAWKEL 772


>Z70683-1|CAA94590.1|  511|Caenorhabditis elegans Hypothetical
           protein F13B12.1 protein.
          Length = 511

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -3

Query: 276 SGIGPGVRLIFRHPSL*ASLMVRGILKK----WSTPTLSSDQPYFTLS 145
           SG+G  V ++++HP+   +   +GI  K    W+ P    D  Y T+S
Sbjct: 337 SGLGKAVMMLYKHPN--ETKENKGIANKLIGEWARPIYHLDTDYSTVS 382


>AC024810-20|AAO21413.1|  137|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16b protein.
          Length = 137

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 193 VVNTHVIIRPTVLYSQSVVL*STNGRGKSEEYNDLHII*LRINSDDTVRYD 41
           + N H++   T+  + + +  STN   + EE++      + +NSDD ++ D
Sbjct: 8   IANPHILSDTTLTDALAALASSTNVENQDEEFD------MEVNSDDEMKID 52


>AC024810-19|AAF60770.1|  427|Caenorhabditis elegans Hypothetical
           protein Y54E10A.16a protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -2

Query: 193 VVNTHVIIRPTVLYSQSVVL*STNGRGKSEEYNDLHII*LRINSDDTVRYD 41
           + N H++   T+  + + +  STN   + EE++      + +NSDD ++ D
Sbjct: 8   IANPHILSDTTLTDALAALASSTNVENQDEEFD------MEVNSDDEMKID 52


>AL590342-1|CAC35858.1|  479|Caenorhabditis elegans Hypothetical
           protein Y66A7A.4 protein.
          Length = 479

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 89  KIVIFFALATAVCGLQHNGLRVKYGWSDDNVGVDH--FFKIPRTISEAYSEGWRK 247
           +IV   +   +VC  Q  GL+ ++ WS    G  H    K     +E +   W+K
Sbjct: 59  QIVSQLSFLMSVCPKQTTGLQSEFSWSPTTRGFAHKIMHKNLMESTELFMTRWKK 113


>AL032622-3|CAB63400.1|  479|Caenorhabditis elegans Y66A7A.4
           protein.
          Length = 479

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +2

Query: 89  KIVIFFALATAVCGLQHNGLRVKYGWSDDNVGVDH--FFKIPRTISEAYSEGWRK 247
           +IV   +   +VC  Q  GL+ ++ WS    G  H    K     +E +   W+K
Sbjct: 59  QIVSQLSFLMSVCPKQTTGLQSEFSWSPTTRGFAHKIMHKNLMESTELFMTRWKK 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,712,513
Number of Sequences: 27780
Number of extensions: 153393
Number of successful extensions: 331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)