Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H03
         (226 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0256 - 19465636-19466709,19467649-19467765,19468168-194682...    26   3.6  
03_06_0483 - 34226496-34226864,34227140-34227360,34227677-342279...    26   3.6  
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536...    26   3.6  
06_03_1099 - 27585382-27586599,27587321-27587446,27587742-27587864     25   6.2  
05_01_0529 - 4561792-4561854,4561954-4562016,4562413-4562471,456...    25   6.2  
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    25   8.2  

>05_04_0256 -
           19465636-19466709,19467649-19467765,19468168-19468279,
           19469019-19469167,19469378-19469449,19469544-19469609,
           19471945-19472073,19474539-19474647,19475225-19475304,
           19475408-19475533,19475607-19475657,19475738-19475920,
           19476019-19476105,19476184-19476294,19476692-19476796,
           19477513-19477678,19477769-19477941,19478022-19478094,
           19479472-19479655,19479759-19480203
          Length = 1203

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 88  HKMGKVKKLKPSQVGKNS 141
           +K GK+KK KPSQ G +S
Sbjct: 873 NKQGKLKKPKPSQEGSSS 890


>03_06_0483 -
           34226496-34226864,34227140-34227360,34227677-34227933,
           34228388-34228483,34228660-34228805,34229774-34229977
          Length = 430

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 152 DPQVLFLPTCEGFNFLTFPILCKRSYIKI 66
           DP++  L  C G +   FP+   RS+I I
Sbjct: 250 DPRITVLLDCHGISPFRFPMQMMRSFITI 278


>03_02_0067 +
           5364713-5364936,5365513-5367016,5367207-5368250,
           5368467-5368577,5368997-5369068,5369719-5369737,
           5369838-5371142,5371317-5371397,5372441-5372604,
           5373363-5373466,5373537-5373628,5374079-5374216,
           5374370-5374426,5374820-5375046
          Length = 1713

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
 Frame = -3

Query: 191 FYSWILQCFLPLFDP-QVL---FLPTCEGFNFLTF 99
           +++WI+Q   PLFD  ++L       C GF  L F
Sbjct: 830 YFAWIVQNSFPLFDAIEILTQSLSRNCSGFTLLVF 864


>06_03_1099 - 27585382-27586599,27587321-27587446,27587742-27587864
          Length = 488

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 220 IIIESVSFFTSILGFYSVSCLYLIRKCYF--YRLVKALTF*LFPFYVNDR 77
           I++ + S  + IL F S++C  L +  YF    LV ++   +F F  N +
Sbjct: 177 IVLLATSISSLILSFISITCSLLPKAYYFLPISLVPSILVGVFHFIYNGK 226


>05_01_0529 -
           4561792-4561854,4561954-4562016,4562413-4562471,
           4562887-4563988
          Length = 428

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 161 PLFDPQVLFLPTCEGFNFL 105
           P  DP + FLP CE  N L
Sbjct: 88  PFVDPSLPFLPKCEFLNVL 106


>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -3

Query: 224 LHHHRVCFF--LYFYSWILQCFLPLFDPQVLFLPTCEGFNF 108
           LH+ +  +F  ++FY     C++ +  P+VL L T + F++
Sbjct: 239 LHYFKSTYFSQIFFYLCSQDCYIDICSPEVLSLFT-DNFDY 278


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,937,169
Number of Sequences: 37544
Number of extensions: 76519
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)