Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H03
         (226 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC062627-1|AAH62627.2|  437|Homo sapiens bystin-like protein.          27   8.2  
BC050645-1|AAH50645.1|  437|Homo sapiens bystin-like protein.          27   8.2  
BC007340-1|AAH07340.3|  437|Homo sapiens bystin-like protein.          27   8.2  
AB065753-1|BAC05973.1|  298|Homo sapiens seven transmembrane hel...    27   8.2  

>BC062627-1|AAH62627.2|  437|Homo sapiens bystin-like protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 143 LADQIEAGNTVKSKNRSKERNR 208
           LADQI AGN V++  R K R R
Sbjct: 19  LADQILAGNAVRAGVREKRRGR 40


>BC050645-1|AAH50645.1|  437|Homo sapiens bystin-like protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 143 LADQIEAGNTVKSKNRSKERNR 208
           LADQI AGN V++  R K R R
Sbjct: 19  LADQILAGNAVRAGVREKRRGR 40


>BC007340-1|AAH07340.3|  437|Homo sapiens bystin-like protein.
          Length = 437

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 143 LADQIEAGNTVKSKNRSKERNR 208
           LADQI AGN V++  R K R R
Sbjct: 19  LADQILAGNAVRAGVREKRRGR 40


>AB065753-1|BAC05973.1|  298|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -3

Query: 218 HHRVCFFLYFYSWILQC-FLPLFDPQVLFLPTC 123
           +HRVCF L   +W++ C    +  P    LP C
Sbjct: 135 NHRVCFMLATGTWMIGCVHAMILTPLTFQLPYC 167


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,767,375
Number of Sequences: 237096
Number of extensions: 443525
Number of successful extensions: 923
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)