Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_H03
         (226 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81575-6|CAB04633.1|  344|Caenorhabditis elegans Hypothetical pr...    29   0.45 
Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical pr...    28   0.78 
AL021475-1|CAA16312.1|  758|Caenorhabditis elegans Hypothetical ...    28   0.78 
Z82086-9|CAB04999.1|  330|Caenorhabditis elegans Hypothetical pr...    27   1.4  
AL021497-22|CAA16412.1|  330|Caenorhabditis elegans Hypothetical...    27   1.4  
AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF022974-3|AAC48037.1|  346|Caenorhabditis elegans Seven tm rece...    26   3.1  
AF067216-14|AAC17517.4|  729|Caenorhabditis elegans Hypothetical...    26   4.1  
Z81100-4|CAE11309.1|  333|Caenorhabditis elegans Hypothetical pr...    25   5.5  
U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated p...    25   5.5  
M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.        25   5.5  
Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical...    25   7.2  
Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    25   9.6  
Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical...    25   9.6  
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    25   9.6  
AC084155-2|AAG23363.2|  167|Caenorhabditis elegans Hypothetical ...    25   9.6  

>Z81575-6|CAB04633.1|  344|Caenorhabditis elegans Hypothetical
           protein R08H2.7 protein.
          Length = 344

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 205 VSFFTSILGFYSVSCLYLIRKCYFYRLVKALTF 107
           +SF  S  G   +SC+ L++K +    +K +TF
Sbjct: 287 ISFTVSFHGILGISCMVLVQKSFRTHFLKMITF 319


>Z48809-4|CAB76413.2|  332|Caenorhabditis elegans Hypothetical
           protein T01E8.7 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 209 VCFFLYFYSWILQCFLPLFDPQVLFLPTCEGF 114
           V F L+F+S ++  F+ LF    + LP+  GF
Sbjct: 53  VIFNLHFWSTLMDLFMGLFVAPFILLPSMSGF 84


>AL021475-1|CAA16312.1|  758|Caenorhabditis elegans Hypothetical
           protein Y32F6B.1 protein.
          Length = 758

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 226 FFIIIESVSFFTSILGFYSVSCLYLIRK 143
           FFI+  +V F  SI GFY  S +  I K
Sbjct: 7   FFIVFGTVYFLESIGGFYMTSAVVFIEK 34


>Z82086-9|CAB04999.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK228.8 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 212 RVCFFLYFYSWILQCFLPLFDPQVLFLPTCEGFNFLTFPILCKRSYIKIYL 60
           R   FL+F   IL  +  L    VL LP C G+      +L   + +++YL
Sbjct: 52  RGLLFLHFAGAILDVYYSLIAAPVLTLPICAGYPLGISLLLGIPTSVQVYL 102


>AL021497-22|CAA16412.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK228.8 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -3

Query: 212 RVCFFLYFYSWILQCFLPLFDPQVLFLPTCEGFNFLTFPILCKRSYIKIYL 60
           R   FL+F   IL  +  L    VL LP C G+      +L   + +++YL
Sbjct: 52  RGLLFLHFAGAILDVYYSLIAAPVLTLPICAGYPLGISLLLGIPTSVQVYL 102


>AL021501-2|CAA16415.2|  356|Caenorhabditis elegans Hypothetical
           protein Y61B8A.2 protein.
          Length = 356

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 218 HHRVCFFLYFYSWILQCFLPL 156
           HHR   FL+  S +LQCF+PL
Sbjct: 251 HHRQKVFLF--SILLQCFIPL 269


>AF022974-3|AAC48037.1|  346|Caenorhabditis elegans Seven tm
           receptor protein 207 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 191 FYSWILQCFLPLFDPQVLFLPTCEGF--NFLTFPI 93
           FYS I Q  +PLF   ++++P C  F  +FLT  +
Sbjct: 249 FYSLIAQTLIPLF---LMYIPGCAMFLLSFLTIDV 280


>AF067216-14|AAC17517.4|  729|Caenorhabditis elegans Hypothetical
           protein C35E7.1 protein.
          Length = 729

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -3

Query: 218 HHRVCFFLYFYSWILQCFLPL 156
           H   C++ Y+Y + L+ F+PL
Sbjct: 18  HGNKCYYKYYYDYDLEEFMPL 38


>Z81100-4|CAE11309.1|  333|Caenorhabditis elegans Hypothetical
           protein K08G2.12 protein.
          Length = 333

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 200 FLYFYSWILQCFLPLFDPQVLFLPTCEGFN 111
           FL+F   I+  +  L    V+ +P C G++
Sbjct: 54  FLHFAGAIVDLYFSLLSMPVILIPVCAGYS 83


>U39745-7|AAA80449.1|  612|Caenorhabditis elegans Uncoordinated
           protein 6 protein.
          Length = 612

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 136 NSTCGSNRGRKHCKIQE 186
           + TCG+NR  K+C ++E
Sbjct: 63  SDTCGTNRPDKYCTVKE 79


>M80241-1|AAA28157.1|  612|Caenorhabditis elegans unc-6 protein.
          Length = 612

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 136 NSTCGSNRGRKHCKIQE 186
           + TCG+NR  K+C ++E
Sbjct: 63  SDTCGTNRPDKYCTVKE 79


>Z81545-8|CAB04444.1|  327|Caenorhabditis elegans Hypothetical
           protein F49H6.11 protein.
          Length = 327

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -3

Query: 197 LYFYSWILQCFLPLF--DPQVLFLPTCEGFNFLTFPILCKRSYIKIYLY*SNVINTLTGF 24
           L+F    +   +P+F  +  VLF+ +    +F+  P++ + SY++  L  + + N  T F
Sbjct: 241 LFFKIITVTISIPIFFDEGSVLFVSSMSIVDFMAMPLVIQLSYLRCNL--NELYNLFTSF 298


>AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical
           protein Y73B3A.13 protein.
          Length = 418

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 61  RYILIYDRLHKMGKVKKLKPSQVGKNSTCGSNRG 162
           RY+ +  R+  M   +KLKP  +     CG   G
Sbjct: 376 RYLAVEKRISAMSTSEKLKPYSMPLFQKCGYQNG 409


>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 203 FFLYFYSWILQCFLPLFDPQVLF 135
           ++ Y+++ I   F P+FDP  +F
Sbjct: 278 YWTYWFASIFISFFPVFDPLAMF 300


>Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical
           protein F14F8.3 protein.
          Length = 331

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -3

Query: 224 LHHHRVCFFLYFYSWILQCFLPLFDPQVLF 135
           +H H +  FL      L  F P F+P V F
Sbjct: 115 VHVHHLIIFLMAVQRFLLVFFPSFEPLVTF 144


>AL117207-14|CAB60394.2|  333|Caenorhabditis elegans Hypothetical
           protein Y60A3A.6 protein.
          Length = 333

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 200 FLYFYSWILQCFLPLFDPQVLFLPTCEGFNFLTFPILCKRSYIKIYL 60
           FL+F   ++  +L      VL LP C G+      +L   + +++Y+
Sbjct: 54  FLHFAGALVDIYLSFIAIPVLTLPVCSGYPLGFSLVLGIPTSVQVYI 100


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 209 VCFFLYFYSWILQCFLP 159
           + F LYF +W + C+ P
Sbjct: 136 IIFVLYFVAWYVICYFP 152


>AC084155-2|AAG23363.2|  167|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.5 protein.
          Length = 167

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 61  RYILIYDRLHKMGKVKKLKPSQVGKNS 141
           R+   YD+LH++   KK K +  GK S
Sbjct: 104 RFRECYDKLHELSHKKKKKKNGTGKFS 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,737,057
Number of Sequences: 27780
Number of extensions: 82595
Number of successful extensions: 294
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)