Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H01
(233 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 77 3e-16
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 76 7e-16
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 48 1e-07
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 35 0.002
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 1.3
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 24 3.1
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 23 4.1
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 23 4.1
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 23 4.1
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 23 4.1
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 23 5.4
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 23 7.1
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|... 23 7.1
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 23 7.1
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 23 7.1
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 23 7.1
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 7.1
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 22 9.4
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 22 9.4
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 77.0 bits (181), Expect = 3e-16
Identities = 34/41 (82%), Positives = 36/41 (87%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKT 211
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ +
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENS 40
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 75.8 bits (178), Expect = 7e-16
Identities = 31/36 (86%), Positives = 33/36 (91%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQM 196
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYM 36
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 48.4 bits (110), Expect = 1e-07
Identities = 21/42 (50%), Positives = 27/42 (64%)
Frame = +2
Query: 92 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIG 217
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEG 44
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 34.7 bits (76), Expect = 0.002
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 190
MRE + + GQ G Q+G A W EHG+ G
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAG 34
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 218 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 123
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 178 DAVLKAIQLPAGISDLDSGLANV 110
+AVLK I GI + D+GLA +
Sbjct: 55 EAVLKRINDTVGIKESDTGLAPI 77
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 23.4 bits (48), Expect = 4.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 196 HLTIRLDAVLKAIQLPAG-ISDLDSGLANVYRDALTHFVLSF 74
H I+ D L I ++ +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 149 WELYCLEHGIQPDGQMPTDKTI 214
WELYC E G +M KTI
Sbjct: 289 WELYCQEAGGIIGDEMGLGKTI 310
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 97 VHLCTRWPSRSPDRK 141
+H WPSR+P RK
Sbjct: 3 LHDAYHWPSRTPSRK 17
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 37 RLINLFYLHLSSKNSIQNA*VHLC 108
+L N+F H ++ IQ A H+C
Sbjct: 199 QLCNIFVNHSKAREDIQKAVNHIC 222
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 178 DAVLKAIQLPAGISDLDS 125
DAV KAIQL SDL S
Sbjct: 241 DAVSKAIQLVKSTSDLGS 258
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 166 KAIQLPAGISDLDSGLANVYR 104
K +QLP +DLD ++YR
Sbjct: 548 KLLQLPLSFNDLDDFQPSLYR 568
>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 241
Score = 22.6 bits (46), Expect = 7.1
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 49 LFYLHLSSKNSIQNA*VHLCTRWPSRSP 132
L Y H +++N I V C WP P
Sbjct: 197 LRYYHKNNRNPIDWKLVQDCAMWPDGYP 224
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 90 CVSASLYTLAKPESRSEMPAGSCIA 164
C A+ +T+ KP+S + G C A
Sbjct: 119 CGVANRFTIIKPKSDARFSQGLCTA 143
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 22.6 bits (46), Expect = 7.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 142 ISDLDSGLANVYRDALTH 89
++ +D GLA YRD TH
Sbjct: 146 VTMIDFGLAKKYRDFKTH 163
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 40 LINLFYLHLSSKNSIQNA*VHLCTRWPSRSP 132
L+ Y+ + S QNA L +RW S+ P
Sbjct: 103 LVGNVYVRFKYEESAQNAIDDLNSRWYSQRP 133
>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 391
Score = 22.6 bits (46), Expect = 7.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 135 SEMPAGSCIALSTASNLMVRCQLTRPSGVE 224
SE P GS +S++ L R +RP +E
Sbjct: 21 SETPGGSTSIISSSFLLQPRASDSRPDALE 50
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 143 ACWELYCLEHGIQPDGQMP 199
A + + C E G+Q DG P
Sbjct: 452 ALYWMCCKEEGVQSDGSAP 470
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -2
Query: 193 LTIRLDAVLKAIQLPAGISDLDSGL 119
+T+R D+V++ + AG++D+ S L
Sbjct: 338 ITVRRDSVIQIDESSAGLTDVISEL 362
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 984,536
Number of Sequences: 5004
Number of extensions: 16922
Number of successful extensions: 46
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 57
effective length of database: 2,077,250
effective search space used: 41545000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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