Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_H01
(233 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 101 7e-23
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 101 7e-23
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 101 7e-23
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 100 3e-22
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 87 2e-18
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 87 2e-18
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 87 2e-18
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 87 2e-18
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 86 3e-18
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 86 3e-18
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 85 8e-18
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 83 3e-17
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 78 1e-15
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 75 7e-15
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 67 1e-12
Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical p... 46 3e-06
Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical pr... 46 3e-06
Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical pr... 45 6e-06
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 44 1e-05
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 44 1e-05
Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical p... 43 3e-05
Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical p... 43 3e-05
Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical pr... 40 2e-04
Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical p... 35 0.009
AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin... 35 0.009
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 32 0.063
AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical ... 27 2.4
AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase prot... 27 2.4
AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear recep... 27 2.4
AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear recep... 27 2.4
AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase prot... 27 2.4
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical pr... 25 7.2
U39674-6|AAA80416.1| 291|Caenorhabditis elegans Hypothetical pr... 25 7.2
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 25 7.2
U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical pr... 25 7.2
AF003389-10|AAC71135.2| 289|Caenorhabditis elegans Hypothetical... 25 7.2
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 25 7.2
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr... 25 9.5
U80837-6|AAB37906.1| 172|Caenorhabditis elegans Hypothetical pr... 25 9.5
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 25 9.5
AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear recep... 25 9.5
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 25 9.5
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 25 9.5
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr... 25 9.5
AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormo... 25 9.5
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 101 bits (242), Expect = 7e-23
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDS 232
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDS
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDS 48
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 101 bits (242), Expect = 7e-23
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDS 232
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDS
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDS 48
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 101 bits (242), Expect = 7e-23
Identities = 41/48 (85%), Positives = 46/48 (95%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDS 232
MRE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDS
Sbjct: 1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDS 48
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 99.5 bits (237), Expect = 3e-22
Identities = 40/47 (85%), Positives = 45/47 (95%)
Frame = +2
Query: 92 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDS 232
RE IS+H+GQAGVQIGNACWELYCLEHGIQPDGQMP+DK++GG DDS
Sbjct: 1 REVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGSDDS 47
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 86.6 bits (205), Expect = 2e-18
Identities = 37/44 (84%), Positives = 38/44 (86%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 220
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG 44
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 86.6 bits (205), Expect = 2e-18
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 220
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG 44
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 86.6 bits (205), Expect = 2e-18
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 220
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+D+ G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSDQQADG 44
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 86.6 bits (205), Expect = 2e-18
Identities = 37/44 (84%), Positives = 38/44 (86%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGG 220
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MPT T G
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG 44
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 86.2 bits (204), Expect = 3e-18
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGG 223
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG 45
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 86.2 bits (204), Expect = 3e-18
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGG 223
MRE IS+HVGQAGVQIGNACWELYCLEHGIQPDG MP+++ GG
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPSEQQNEGG 45
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 84.6 bits (200), Expect = 8e-18
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDS 232
MRE +S+H+GQAGVQIGNACWELYCLEHGI PDG MP D + G D S
Sbjct: 1 MREIVSIHIGQAGVQIGNACWELYCLEHGITPDGLMPDDTSYGVEDQS 48
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 83.0 bits (196), Expect = 3e-17
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +2
Query: 86 KMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDS 232
+ RE IS+HVGQAGVQ+GNACWELYCLEHGIQPDG + + ++G DDS
Sbjct: 5 RSREVISIHVGQAGVQMGNACWELYCLEHGIQPDGMINEEDSLGVDDDS 53
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 77.8 bits (183), Expect = 1e-15
Identities = 35/45 (77%), Positives = 37/45 (82%), Gaps = 1/45 (2%)
Frame = +2
Query: 80 QYK-MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKT 211
QYK RE IS+HVGQAGVQIGNACWEL+CLEHGIQPDG D T
Sbjct: 3 QYKGSREVISIHVGQAGVQIGNACWELFCLEHGIQPDGYHVEDDT 47
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 74.9 bits (176), Expect = 7e-15
Identities = 31/34 (91%), Positives = 32/34 (94%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 190
MRE IS+HVGQAGVQIGNACWELYCLEHGI PDG
Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGILPDG 34
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 67.3 bits (157), Expect = 1e-12
Identities = 24/33 (72%), Positives = 29/33 (87%)
Frame = +2
Query: 92 RECISVHVGQAGVQIGNACWELYCLEHGIQPDG 190
REC+S+H+GQAG QIGNACWELYC+EHG+ G
Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAG 38
>Z92803-10|CAB07246.1| 449|Caenorhabditis elegans Hypothetical
protein K01G5.7 protein.
Length = 449
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 190
MRE + V GQ G QIG+ WE+ EHGIQPDG
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDG 34
>Z35597-5|CAA84648.1| 450|Caenorhabditis elegans Hypothetical
protein C36E8.5 protein.
Length = 450
Score = 46.4 bits (105), Expect = 3e-06
Identities = 20/34 (58%), Positives = 23/34 (67%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 190
MRE + V GQ G QIG+ WE+ EHGIQPDG
Sbjct: 1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDG 34
>Z77131-2|CAB00853.4| 444|Caenorhabditis elegans Hypothetical
protein C54C6.2 protein.
Length = 444
Score = 45.2 bits (102), Expect = 6e-06
Identities = 20/34 (58%), Positives = 22/34 (64%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDG 190
MRE + V GQ G QIG WE+ EHGIQPDG
Sbjct: 1 MREIVHVQAGQCGNQIGAKFWEVISDEHGIQPDG 34
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTI 214
MRE + + GQ G QIG+ WE+ EHGI P GQ D +
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL 42
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTI 214
MRE + + GQ G QIG+ WE+ EHGI P GQ D +
Sbjct: 1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDSDL 42
>Z78200-11|CAB01587.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 205
M+E I+V VGQ G QIG WE EHG+Q DG D
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGD 39
>Z78198-13|CAB01575.2| 426|Caenorhabditis elegans Hypothetical
protein T04H1.9 protein.
Length = 426
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/39 (51%), Positives = 23/39 (58%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD 205
M+E I+V VGQ G QIG WE EHG+Q DG D
Sbjct: 1 MKEIINVQVGQCGNQIGAKFWEYISEEHGLQTDGTYKGD 39
>Z46240-1|CAA86310.1| 444|Caenorhabditis elegans Hypothetical
protein B0272.1 protein.
Length = 444
Score = 40.3 bits (90), Expect = 2e-04
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 89 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTI 214
MRE + + GQ G QIG WE+ EHGI P G D +
Sbjct: 1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGAYNGDSDL 42
>Z22179-11|CAA80164.1| 444|Caenorhabditis elegans Hypothetical
protein F58A4.8 protein.
Length = 444
Score = 34.7 bits (76), Expect = 0.009
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 101 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 193
++VHVGQ G Q+ A W+ EHGI GQ
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQ 38
>AF287259-1|AAG24513.1| 444|Caenorhabditis elegans gamma-tubulin
protein.
Length = 444
Score = 34.7 bits (76), Expect = 0.009
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 101 ISVHVGQAGVQIGNACWELYCLEHGIQPDGQ 193
++VHVGQ G Q+ A W+ EHGI GQ
Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQ 38
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 31.9 bits (69), Expect = 0.063
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 155 LYCLEHGIQPDGQMPTDKT 211
++CLEHGIQPDG D T
Sbjct: 1 MFCLEHGIQPDGYHVEDDT 19
>AL021387-2|CAA16168.1| 463|Caenorhabditis elegans Hypothetical
protein H01A20.1 protein.
Length = 463
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 83 YKMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP-TDKT 211
Y R + +AG + +C CLE G++PD P DKT
Sbjct: 87 YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF399825-1|AAK77200.1| 1262|Caenorhabditis elegans separase
protein.
Length = 1262
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 81 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSG 218
NT +S+ A E +++ SC+ L +++ ++VRC + +G
Sbjct: 356 NTLAYYSSIIEEAGSEKNAKLMRVSCVNLLSSNPIIVRCSTPKETG 401
>AF273769-1|AAG15118.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 83 YKMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP-TDKT 211
Y R + +AG + +C CLE G++PD P DKT
Sbjct: 87 YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AF083222-1|AAD03680.1| 463|Caenorhabditis elegans nuclear receptor
NHR-3 protein.
Length = 463
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 83 YKMRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMP-TDKT 211
Y R + +AG + +C CLE G++PD P DKT
Sbjct: 87 YVCRYSKKCRIDKAGRNVCRSCRFQKCLEVGMEPDAIRPDRDKT 130
>AC024791-1|AAF60651.1| 1262|Caenorhabditis elegans Separase protein
1 protein.
Length = 1262
Score = 26.6 bits (56), Expect = 2.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +3
Query: 81 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSG 218
NT +S+ A E +++ SC+ L +++ ++VRC + +G
Sbjct: 356 NTLAYYSSIIEEAGSEKNAKLMRVSCVNLLSSNPIIVRCSTPKETG 401
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 26.2 bits (55), Expect = 3.1
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Frame = -3
Query: 222 PPPMVLSVGI*PSGWM----PCSRQ-YSSQQAFPIWTPAWPTCTEMH 97
PPPM + G+ PSG++ P Q YS+ P P P T M+
Sbjct: 65 PPPMGIGAGVNPSGYVQQAPPLPTQGYSAYNQQPPPLPQQPYQTNMY 111
>Z48009-5|CAA88086.1| 329|Caenorhabditis elegans Hypothetical
protein AH6.7 protein.
Length = 329
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 106 CTRWPSRSPDRKCLLGAV 159
CT WPS+S DR + ++
Sbjct: 175 CTSWPSKSRDRSTMFFSI 192
>U39674-6|AAA80416.1| 291|Caenorhabditis elegans Hypothetical
protein C06E2.1 protein.
Length = 291
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 143 HFRSGLRLGQRVQRCTHAFCIEFFELKCR 57
H S + L + +C+ AF IEF LK R
Sbjct: 209 HALSLIHLENAIVKCSRAFTIEFDYLKLR 237
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical
protein F48E3.8b protein.
Length = 1299
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +3
Query: 69 FKKLNTKCVSASLYTLAKPESRSEMPAGSCIA 164
+ +N +C +A++ T A+PE+ S++ + C+A
Sbjct: 845 YTNINGQC-AANIVTPAEPETLSQVKSTKCLA 875
>U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical
protein T22F7.5 protein.
Length = 462
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -1
Query: 194 SDHQVGCRAQGNTAPSRHFRSGLRLGQRVQRCTH 93
+DH V C A G + P+ +F ++ Q C H
Sbjct: 32 NDHPVVCTASGASCPTGYFCQFSDRNKQFQCCGH 65
>AF003389-10|AAC71135.2| 289|Caenorhabditis elegans Hypothetical
protein F23H11.7 protein.
Length = 289
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 108 YTLAKPESRSEMPAG 152
Y + PESRSE PAG
Sbjct: 30 YQVCAPESRSECPAG 44
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = -2
Query: 199 WHLTIRLDAVLKAIQLPAGISDLDSGLANVYRDALTHFVLSFLNLSVDKIN*SVVVQRDQ 20
+HLT+R + L SD+DSG + + H + + S++ + V Q+
Sbjct: 646 YHLTVREGPKPEEPLLVVSASDMDSG---TFGEVSYHILSESSSFSINPVTGEVFAQKPL 702
Query: 19 LRG 11
RG
Sbjct: 703 ARG 705
>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 230 SRLHPRWSCQLASDHQVGCRAQGNTAPSR 144
S +H WS Q D Q+ RAQ ++ S+
Sbjct: 2970 SGVHITWSRQFGKDGQLDMRAQSSSDKSK 2998
>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 230 SRLHPRWSCQLASDHQVGCRAQGNTAPSR 144
S +H WS Q D Q+ RAQ ++ S+
Sbjct: 2970 SGVHITWSRQFGKDGQLDMRAQSSSDKSK 2998
>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical protein
F15G9.4b protein.
Length = 5198
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 230 SRLHPRWSCQLASDHQVGCRAQGNTAPSR 144
S +H WS Q D Q+ RAQ ++ S+
Sbjct: 2970 SGVHITWSRQFGKDGQLDMRAQSSSDKSK 2998
>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical protein
F15G9.4a protein.
Length = 5175
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 230 SRLHPRWSCQLASDHQVGCRAQGNTAPSR 144
S +H WS Q D Q+ RAQ ++ S+
Sbjct: 2970 SGVHITWSRQFGKDGQLDMRAQSSSDKSK 2998
>U80837-6|AAB37906.1| 172|Caenorhabditis elegans Hypothetical
protein F07E5.7 protein.
Length = 172
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 42 D*FILSTLKFKKLNTKCVSASLYTLAKPESRSEMPAGSCIAL 167
D +I STL F++ T+ ++ + + EMPA +C+ L
Sbjct: 8 DVYISSTLPFEETTTEMMTTMETSTMTEKVCPEMPATTCMDL 49
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 131 QIGNACWELYCLEHGIQPDGQMPTDKTIGGG 223
QI +C CL +G++P G P I G
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG 93
>AF273832-1|AAG15180.1| 408|Caenorhabditis elegans nuclear receptor
NHR-90 protein.
Length = 408
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 77 TQYKMRECISVHVGQAGVQIGNACWELYCLEHGIQ 181
T+Y +C+SVH G+A + C C E G++
Sbjct: 55 TKYLRLKCLSVHCGEA-ARFCKPCRLKRCYEAGMK 88
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 131 QIGNACWELYCLEHGIQPDGQMPTDKTIGGG 223
QI +C CL +G++P G P I G
Sbjct: 81 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG 111
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 131 QIGNACWELYCLEHGIQPDGQMPTDKTIGGG 223
QI +C CL +G++P G P I G
Sbjct: 63 QICRSCRHKKCLSNGMKPGGVQPKKPNIETG 93
>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
precursor protein.
Length = 5198
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 230 SRLHPRWSCQLASDHQVGCRAQGNTAPSR 144
S +H WS Q D Q+ RAQ ++ S+
Sbjct: 2970 SGVHITWSRQFGKDGQLDMRAQSSSDKSK 2998
>AF022984-9|AAB69950.2| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 90 protein.
Length = 393
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 77 TQYKMRECISVHVGQAGVQIGNACWELYCLEHGIQ 181
T+Y +C+SVH G+A + C C E G++
Sbjct: 40 TKYLRLKCLSVHCGEA-ARFCKPCRLKRCYEAGMK 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,659,097
Number of Sequences: 27780
Number of extensions: 102525
Number of successful extensions: 354
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 57
effective length of database: 11,156,738
effective search space used: 223134760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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