Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G24
(288 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 157 2e-40
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 157 3e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 157 3e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 105 2e-24
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 100 8e-23
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 77 7e-16
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 39 1e-04
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 28 0.23
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 28 0.31
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 0.31
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 27 0.54
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 0.72
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 1.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 1.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 25 2.2
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc... 24 3.8
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 24 5.0
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 23 6.7
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 23 6.7
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe... 23 8.8
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 23 8.8
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 157 bits (382), Expect = 2e-40
Identities = 76/95 (80%), Positives = 86/95 (90%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 182
T IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA+TLGVKQ
Sbjct: 88 TVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQ 147
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
LIV VNKMD+T +S++RFEEI KE S++IKK+G
Sbjct: 148 LIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVG 180
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 157 bits (381), Expect = 3e-40
Identities = 75/95 (78%), Positives = 86/95 (90%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 182
T IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQ
Sbjct: 88 TVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQ 147
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
LIV VNKMD+T +S++RFEEI KE S++IKK+G
Sbjct: 148 LIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVG 180
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 157 bits (381), Expect = 3e-40
Identities = 75/95 (78%), Positives = 86/95 (90%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 182
T IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA+TLGVKQ
Sbjct: 88 TVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQ 147
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
LIV VNKMD+T +S++RFEEI KE S++IKK+G
Sbjct: 148 LIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVG 180
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 105 bits (251), Expect = 2e-24
Identities = 44/92 (47%), Positives = 66/92 (71%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
+DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA T G+ L+
Sbjct: 321 LDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLV 380
Query: 189 VGVNKMDSTEPPYSESRFEEIKKEVSSYIKKI 284
V +NKMD +SE R++E ++S +++++
Sbjct: 381 VVINKMDEPSVQWSEERYKECVDKLSMFLRRV 412
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 99.5 bits (237), Expect = 8e-23
Identities = 50/93 (53%), Positives = 62/93 (66%), Gaps = 1/93 (1%)
Frame = +3
Query: 12 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 191
DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L LG+ +++V
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 192 GVNKMDSTEPPYSESRFEEIKKEVSSY-IKKIG 287
VNK+D +SE RF+EIK VS + IK +G
Sbjct: 321 SVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVG 351
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 76.6 bits (180), Expect = 7e-16
Identities = 39/88 (44%), Positives = 56/88 (63%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
+D PGH D+IKNMITG + D A+++V+A G+ QTREH LLA +GVKQ++
Sbjct: 121 VDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIV 173
Query: 189 VGVNKMDSTEPPYSESRFEEIKKEVSSY 272
V +NK+D EP E E+++ +S Y
Sbjct: 174 VYINKVDMVEPDMIELVEMEMRELLSEY 201
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 39.1 bits (87), Expect = 1e-04
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
+D PGH + M+ G + D A+L++A QT EH + +K +I
Sbjct: 113 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHII 166
Query: 189 VGVNKMDSTEPPYSESRFEEIKKEVSSYI 275
+ NK+D +E ++ I K + +
Sbjct: 167 ILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 28.3 bits (60), Expect = 0.23
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 149
ID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 150 IDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.9 bits (59), Expect = 0.31
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIV 89
ID PGH F GTS + A+L++
Sbjct: 554 IDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 0.31
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 104
T +D PGH F G + AD VL+VA G
Sbjct: 223 TFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
Score = 24.2 bits (50), Expect = 3.8
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 103 PVPAATISTAQSA*DVPVIMFLMKSLCPGASI 8
P I QSA DVPV++ L KS PG I
Sbjct: 259 PQTVEAIKHIQSA-DVPVVVALTKSDRPGTPI 289
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 27.1 bits (57), Expect = 0.54
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
ID PGH DF + + D AV I+ + AG+ QT+ A G+ ++I
Sbjct: 98 IDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIPKVI 150
Query: 189 VGVNKMD 209
VNKMD
Sbjct: 151 F-VNKMD 156
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 0.72
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIV 89
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 1.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 213 TEPPYSESRFEEIKKEVSSYIKK 281
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1385
Score = 25.4 bits (53), Expect = 1.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 110 EFTSTSGDNKHGAVSLRRSSDHVLDE 33
+F S+ + K+G + SSD VLDE
Sbjct: 1234 DFVSSKRNGKNGGSFIEESSDTVLDE 1259
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 2.2
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Frame = -3
Query: 268 EETSFLISSNRDSLYGGSVESILFTPTISCLTPSVKASRACSRVCPFFEIPAS-NSPVPA 92
E + + ISSN S S FT + S TP++ S + V + +S +SP+ +
Sbjct: 757 ETSGYTISSN-SSQNSASEPQTAFTSSSSSATPTITQSSISTSVSSQSSMNSSYSSPISS 815
Query: 91 ATISTAQS 68
+++++ S
Sbjct: 816 NSVTSSTS 823
Score = 23.4 bits (48), Expect = 6.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 95 WYW*IRSRYLKERTNA*TRSARFHTRSQATD 187
W + +RYL + + T S+ F T ++ATD
Sbjct: 470 WVTEVFTRYLGDDSTPVTSSSIFSTATEATD 500
>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 381
Score = 24.2 bits (50), Expect = 3.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 20 WTQRFHQEHDHWN 58
W Q F Q+H +WN
Sbjct: 258 WQQSFLQDHGYWN 270
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 23.8 bits (49), Expect = 5.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 221 WLSGVHFVYSYNQLLDSECE 162
W++G H Y N L+S CE
Sbjct: 1214 WINGKHGSYCENNELNSGCE 1233
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 23.4 bits (48), Expect = 6.7
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 174 VKQLIVGVNKMDSTEPPYSESRFEEIKKEVSSYI 275
+ QLI + ++D TE P ++ +EE + SYI
Sbjct: 60 LSQLIDYILEVDETEIPSADGGYEEPEHTRLSYI 93
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 6.7
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +3
Query: 207 DSTEPPYSESRFEEIKKEVSSYIKKI 284
D P Y ++E +KK ++ I K+
Sbjct: 109 DVNTPEYQRMQWEALKKSINGLINKV 134
>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 23.0 bits (47), Expect = 8.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 157 SRACSRVCPFFEIPASNSPVP 95
S +C+R+ P +P S P P
Sbjct: 605 SLSCARIRPLVMVPKSKKPSP 625
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 23.0 bits (47), Expect = 8.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 69 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 191
D L V+ G +NGQ EH+L LGV +I+
Sbjct: 581 DGGTLYVSTNNGYVLMFNFQNGQVIEHSLRRNQLGVAPIIL 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,155,298
Number of Sequences: 5004
Number of extensions: 19883
Number of successful extensions: 110
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 67723590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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