Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G24
(288 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 171 9e-44
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 171 9e-44
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 122 3e-29
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 116 3e-27
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 116 3e-27
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 110 2e-25
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 62 6e-22
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 70 3e-13
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 70 3e-13
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 65 9e-12
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 65 9e-12
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 65 9e-12
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 43 3e-05
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 37 0.002
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 35 0.008
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.043
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 31 0.13
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 28 0.93
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 2.2
U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical pr... 27 2.2
CU457740-1|CAM36331.1| 122|Caenorhabditis elegans Hypothetical ... 27 2.9
Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical pr... 26 3.8
Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical pr... 26 3.8
U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn (wern... 26 3.8
AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical ... 26 3.8
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 26 5.0
AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical ... 26 5.0
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 25 6.6
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 25 6.6
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 25 8.7
AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical ... 25 8.7
AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical ... 25 8.7
AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm rece... 25 8.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 171 bits (415), Expect = 9e-44
Identities = 82/95 (86%), Positives = 86/95 (90%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 182
T IDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQ
Sbjct: 88 TIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQ 147
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
LIV NKMDSTEPP+SE+RF EI EVS +IKKIG
Sbjct: 148 LIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIG 182
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 171 bits (415), Expect = 9e-44
Identities = 82/95 (86%), Positives = 86/95 (90%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 182
T IDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQ
Sbjct: 88 TIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQ 147
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
LIV NKMDSTEPP+SE+RF EI EVS +IKKIG
Sbjct: 148 LIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIG 182
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 122 bits (295), Expect = 3e-29
Identities = 63/85 (74%), Positives = 68/85 (80%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 182
T IDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQ
Sbjct: 88 TIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQ 147
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKK 257
L V+ T P S R + I++
Sbjct: 148 L---VSLRSPTRSPDSSRRSDTIQR 169
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 116 bits (279), Expect = 3e-27
Identities = 54/91 (59%), Positives = 70/91 (76%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
+DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLI
Sbjct: 253 LDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLI 312
Query: 189 VGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 281
V VNK+D+ + +S+ RF+EIK +S ++ +
Sbjct: 313 VAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 341
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 116 bits (279), Expect = 3e-27
Identities = 54/91 (59%), Positives = 70/91 (76%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
+DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLI
Sbjct: 271 LDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLI 330
Query: 189 VGVNKMDSTEPPYSESRFEEIKKEVSSYIKK 281
V VNK+D+ + +S+ RF+EIK +S ++ +
Sbjct: 331 VAVNKLDTVD--WSQDRFDEIKNNLSVFLTR 359
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 110 bits (264), Expect = 2e-25
Identities = 47/95 (49%), Positives = 69/95 (72%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 182
T +DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L T GVK
Sbjct: 190 TILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKH 249
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
L++ VNKMD + E RF+EI+ +++ +++K+G
Sbjct: 250 LVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLG 284
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 62.5 bits (145), Expect(2) = 6e-22
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVA 92
T IDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 88 TIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 56.8 bits (131), Expect(2) = 6e-22
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = +3
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
L+V NKMDSTEPP+SE+RF EI EVS +IKKIG
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIG 148
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 69.7 bits (163), Expect = 3e-13
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = +3
Query: 12 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 191
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 192 GVNKMDSTE 218
+NK D E
Sbjct: 167 FINKADLVE 175
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 69.7 bits (163), Expect = 3e-13
Identities = 36/69 (52%), Positives = 44/69 (63%)
Frame = +3
Query: 12 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 191
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 192 GVNKMDSTE 218
+NK D E
Sbjct: 167 FINKADLVE 175
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 64.9 bits (151), Expect = 9e-12
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQ 182
ID PGH D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 117 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDN 169
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
++V +NK+D E P +E+R E ++ ++ + + G
Sbjct: 170 IVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFG 201
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 64.9 bits (151), Expect = 9e-12
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQ 182
ID PGH D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDN 170
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
++V +NK+D E P +E+R E ++ ++ + + G
Sbjct: 171 IVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFG 202
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 64.9 bits (151), Expect = 9e-12
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQ 182
ID PGH D+IKNMITG +Q + A+L+VAA G QTREH LLA +GV
Sbjct: 118 IDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDN 170
Query: 183 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
++V +NK+D E P +E+R E ++ ++ + + G
Sbjct: 171 IVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFG 202
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 43.2 bits (97), Expect = 3e-05
Identities = 30/93 (32%), Positives = 48/93 (51%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA ++I
Sbjct: 77 IDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPNRVI 129
Query: 189 VGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIG 287
+ +NK D E +S+ E K+V +K +G
Sbjct: 130 IVLNKCDLAE----KSKISESAKKVRKGLKSMG 158
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 37.1 bits (82), Expect = 0.002
Identities = 27/69 (39%), Positives = 32/69 (46%)
Frame = +3
Query: 3 TRIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 182
T +D PGH F G AD VL+VAA G E QT + A V Q
Sbjct: 207 TFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV-Q 258
Query: 183 LIVGVNKMD 209
L+V VNK+D
Sbjct: 259 LVVAVNKID 267
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 35.1 bits (77), Expect = 0.008
Identities = 21/81 (25%), Positives = 35/81 (43%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
+D PGH + M+ G + D A L+VA QT EH + + L+
Sbjct: 132 VDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQLNHLM 185
Query: 189 VGVNKMDSTEPPYSESRFEEI 251
+ NK+D + + +E+I
Sbjct: 186 ILQNKVDIIKESQARENYEQI 206
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 32.7 bits (71), Expect = 0.043
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 202 LFTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTA 74
LF PT+SC+ AS S P PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 31.1 bits (67), Expect = 0.13
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
ID PGH DF + + D +L+VAA G QT + LAF + Q+I
Sbjct: 107 IDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKNI-QII 158
Query: 189 VGVNKMD 209
+NK+D
Sbjct: 159 PVINKID 165
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 28.3 bits (60), Expect = 0.93
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIV 89
ID PGH F G+S D A+L+V
Sbjct: 554 IDTPGHESFSNLRTRGSSLCDFAILVV 580
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 245 LKSRLTVWWLSGVHFVYSYN 186
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>U41272-4|AAA82448.2| 349|Caenorhabditis elegans Hypothetical
protein T03G11.3 protein.
Length = 349
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = -3
Query: 193 PTISCLTPSVKASRACSRVCPFFE--IPASNSPVPAATISTA 74
PT+ +TPS K S + R P + P PA+T +TA
Sbjct: 270 PTLPPMTPSSKRSSSAKRDAPLQQSSTPQQRLKTPASTTTTA 311
>CU457740-1|CAM36331.1| 122|Caenorhabditis elegans Hypothetical
protein C50E10.1 protein.
Length = 122
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 172 PSVKASRACSRVCPFFEIPASNSPVPAATISTAQSA*DVPVIMF 41
P+ ++ ++ F+ IP+ N P +AT ST+ ++P I F
Sbjct: 43 PTSPSTDIGEQMASFWNIPSPNPPATSATSSTSPEE-EIPCICF 85
>Z68106-8|CAA92125.2| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = -3
Query: 211 ESILFTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTAQSA*DVPVIMFL 38
++ +F P + + +A C C FF+ P S + ++T A +P ++ L
Sbjct: 150 KNYIFPPILGLGSAFSEALAICFTACVFFDFPLSLGLICGFVVATVSPAVGMPTMIRL 207
>Z49153-3|CAD30426.1| 558|Caenorhabditis elegans Hypothetical
protein F41E7.2 protein.
Length = 558
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = -3
Query: 211 ESILFTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTAQSA*DVPVIMFL 38
++ +F P + + +A C C FF+ P S + ++T A +P ++ L
Sbjct: 150 KNYIFPPILGLGSAFSEALAICFTACVFFDFPLSLGLICGFVVATVSPAVGMPTMIRL 207
>U29097-2|AAA68410.2| 1056|Caenorhabditis elegans Human wrn
(werner's syndrome) relatedprotein 1 protein.
Length = 1056
Score = 26.2 bits (55), Expect = 3.8
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 45 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 224
++TG A I+ G E A + G +R + + T + I+G NK+ EP
Sbjct: 730 LLTGKEMKIDATPILLQGKKEKAAPSTVPGASRSQSTKSST-EIPTKILGANKIREYEPA 788
Query: 225 YSESRFEEIKK-EVSSYIKKI 284
+ +KK EV+ +KI
Sbjct: 789 NENEQLMNLKKQEVTGLPEKI 809
>AC024205-2|AAF36046.1| 308|Caenorhabditis elegans Hypothetical
protein Y73C8B.3 protein.
Length = 308
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 116 GFEFTSTSGDNKHGAVSLRRSSDHVLDEISV 24
GF FT+ D KH + + S+ +LDE+ +
Sbjct: 74 GFTFTNEYPDQKHINIERQNYSNALLDELGI 104
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 201 KMDSTEPPYSESRFEEIKKEVSSYIKK 281
KMD +P E + EE KKE+ KK
Sbjct: 160 KMDDKKPGEKEEKKEEFKKEMKKEEKK 186
>AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical
protein Y53G8AL.3 protein.
Length = 252
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 124 EIPASNSPVPAATISTAQSA*DVPVIMFLMKSLC 23
E+PA+ +PV +S+A + +V +I+F C
Sbjct: 39 EVPATTTPVSLEFVSSAHTTQNVLLIIFAASKEC 72
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 25.4 bits (53), Expect = 6.6
Identities = 22/67 (32%), Positives = 28/67 (41%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 188
ID PGH DF + D AVL++ G G G+ T L + + I
Sbjct: 117 IDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV---PFI 168
Query: 189 VGVNKMD 209
VNKMD
Sbjct: 169 CFVNKMD 175
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 260 FLLDFLKSRLTVWWLSGVHFVYSYNQLLD 174
FL+DF T+ L VHF+Y Y + D
Sbjct: 88 FLIDFCAFYFTLILLLVVHFIYRYVVVCD 116
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/54 (20%), Positives = 25/54 (46%)
Frame = +3
Query: 9 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTL 170
ID PGH I+ ++ ++ D A+ +++ + G+ G ++ +L
Sbjct: 77 IDCPGHSGLIRAVLAASTVFDMAI-VISESAKKVRKGLKSMGVDENSPIVEMSL 129
>AF101304-2|AAN60536.1| 1123|Caenorhabditis elegans Hypothetical
protein C02E11.1b protein.
Length = 1123
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 116 GFEFTSTSGDNKHGAVSLRRSSDHVLDEIS 27
GF+FT TS +V L + S V+DE++
Sbjct: 770 GFKFTPTSTPGHFQSVKLSQLSIKVVDEVT 799
>AF101304-1|AAC69200.2| 1121|Caenorhabditis elegans Hypothetical
protein C02E11.1a protein.
Length = 1121
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 116 GFEFTSTSGDNKHGAVSLRRSSDHVLDEIS 27
GF+FT TS +V L + S V+DE++
Sbjct: 768 GFKFTPTSTPGHFQSVKLSQLSIKVVDEVT 797
>AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm
receptor protein 85 protein.
Length = 340
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 260 FLLDFLKSRLTVWWLSGVHFVYSYNQLLDS 171
FLL F T+ L VHF+Y Y + DS
Sbjct: 88 FLLGFCAIYYTLITLLVVHFIYRYIVICDS 117
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,397,586
Number of Sequences: 27780
Number of extensions: 110890
Number of successful extensions: 515
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 269889950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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