Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G23
(369 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 180 5e-47
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 180 5e-47
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 180 5e-47
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 70 1e-13
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 36 0.002
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 1.2
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 1.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 26 2.1
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 26 2.1
SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc... 25 2.8
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 3.7
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 25 4.9
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 4.9
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 6.5
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 24 6.5
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.5
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c... 24 6.5
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 24 6.5
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 24 8.6
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 24 8.6
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 8.6
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S... 24 8.6
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 180 bits (439), Expect = 5e-47
Identities = 82/120 (68%), Positives = 100/120 (83%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 189
LIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T
Sbjct: 148 LIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTN 205
Query: 190 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 369
MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRV
Sbjct: 206 MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 265
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 180 bits (439), Expect = 5e-47
Identities = 82/120 (68%), Positives = 100/120 (83%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 189
LIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T
Sbjct: 148 LIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTN 205
Query: 190 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 369
MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRV
Sbjct: 206 MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 265
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 180 bits (439), Expect = 5e-47
Identities = 82/120 (68%), Positives = 100/120 (83%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 189
LIV VNKMD+T +S++RFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T
Sbjct: 148 LIVAVNKMDTTG--WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTN 205
Query: 190 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 369
MPW++GW E K G +GK L+EA+D+I PPARPTDK LRLPLQDVYKIGGIGTVPVGRV
Sbjct: 206 MPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPTDKPLRLPLQDVYKIGGIGTVPVGRV 265
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 69.7 bits (163), Expect = 1e-13
Identities = 47/123 (38%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNMLEPST 186
++V VNK+D +SE RF+EIK VS + IK +G+ + V FVPIS G N+++ +
Sbjct: 318 IVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDS 375
Query: 187 K--MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPV 360
W+KG L+ ALD ++PP +P K LRL + DVY+ TV
Sbjct: 376 SDLYKWYKG------------PTLLSALDQLVPPEKPYRKPLRLSIDDVYRSPRSVTV-T 422
Query: 361 GRV 369
GRV
Sbjct: 423 GRV 425
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 36.3 bits (80), Expect = 0.002
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 250 LIEALDAILP-PARPTDKALRLPLQDVYKIGGIGTVPVGRV 369
L+EA+D+ + P R TD + ++DV+ I G GTV GRV
Sbjct: 234 LMEAVDSYITLPERKTDVPFLMAIEDVFSISGRGTVVTGRV 274
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 1.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 38 PLSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLS 139
P S +++ +K +LPTS K++T PS+S
Sbjct: 402 PTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVS 435
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 1.6
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = -1
Query: 330 VYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFGGRLQHVI 163
V++ Q + S++ G + + V LNKAF+ S + F + S P HF ++ +V+
Sbjct: 1522 VWLSQAYSPSVLQGTT---ENVAFLNKAFSASANLFDVLPVSNTPSHF-SKMDYVL 1573
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.8 bits (54), Expect = 2.1
Identities = 13/50 (26%), Positives = 23/50 (46%)
Frame = +2
Query: 83 RKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKE 232
R+S S + + LPS PF++ + + ++P G + KKE
Sbjct: 639 RRSFKPSEEAAKLSLPSRKNPFVSDSAVLKVNKPEMKEGQKKAEARKKKE 688
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 2.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 31 MDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 201
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 138
Score = 25.4 bits (53), Expect = 2.8
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 40 TEPPYSESRFEEIKKEVSSYIKK 108
+EPP + S +E+ KKE+ I+K
Sbjct: 9 SEPPVNVSYYEQCKKELHEMIEK 31
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 3.7
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 82 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 207
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 208 WLVERKEGKAEGKCLIEALDAILPPARPTDKALRLP 315
+L+ + K G E++DA+LP + +L +P
Sbjct: 628 YLLSSENAKDTGDIKSESIDAVLPTLETSSPSLSIP 663
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 311 FPCKTYTKSAVLEQYPW 361
FPCK S L QYP+
Sbjct: 173 FPCKASAHSVPLSQYPY 189
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 6.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 247 CLIEALDAILPPARPTDKALRLPLQD 324
CLIE +AILP +DK L + +
Sbjct: 1349 CLIEKSNAILPHGSTSDKLFLLEIPE 1374
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 160 GDNMLEPSTKMPWFKGWLVERKEGK 234
GD +L + PW+ L+ RKE K
Sbjct: 53 GDRILVKAPGYPWWPALLLRRKETK 77
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 24.2 bits (50), Expect = 6.5
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 265 DAILPPARPTDKALRLPLQDVYKIGGIGTVPV 360
+ I P A+P+D+ L + + +GT+PV
Sbjct: 505 ERIEPEAKPSDETLTVRSSRDLSVHNVGTLPV 536
>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 6.5
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 41 LSHHTVSLDLRKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWS 178
LS+ T L + KSL ++ +T R+ +L+ P++ +CW+
Sbjct: 414 LSNDTNKLAVYMGFYKSLQSAGAAITYRMDTLNIPYM-NYFASCWA 458
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.2 bits (50), Expect = 6.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 312 KTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSLEPWHFG 184
+T L S +S + VEGLN S N PS + HFG
Sbjct: 309 ETSELSSTSSEQTSDVEGLNAYNNLGASSDIENAPSSQ-LHFG 350
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/41 (21%), Positives = 18/41 (43%)
Frame = +1
Query: 34 DSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 156
DS P + + + + YI+++G P + I+ W
Sbjct: 513 DSFNTPLVMQHIDNLVTQANIYIREVGQQPCSRLLGQIASW 553
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 23.8 bits (49), Expect = 8.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 191 CHGSRDGWLSVKKERLKVNALLRPSTPSFRLL 286
C GS G+ + E +LL P+ SFR L
Sbjct: 994 CVGSFKGFDIISLENAVFQSLLNPADTSFRFL 1025
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 23.8 bits (49), Expect = 8.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 67 IETHCMVAQWSPFCLLLQSVLV 2
+ET C +W C LL S+ V
Sbjct: 33 VETFCFFRRWKIACTLLCSITV 54
>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 23.8 bits (49), Expect = 8.6
Identities = 18/67 (26%), Positives = 26/67 (38%)
Frame = +2
Query: 71 RKSRRKSLPTSRKLVTIRLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 250
RK S+P + L+T P +S P + W C S + W V
Sbjct: 333 RKLEFDSIPFNCPLITQLFPLISSP-----KEMAWLLLIVCTDSNESWFPVHAYINTKTR 387
Query: 251 LLRPSTP 271
+LRP +P
Sbjct: 388 ILRPRSP 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.138 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,787,247
Number of Sequences: 5004
Number of extensions: 37912
Number of successful extensions: 162
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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