Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G23
(369 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 205 7e-54
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 205 7e-54
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 205 9e-54
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 66 7e-12
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 66 7e-12
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 54 4e-08
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 53 6e-08
AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set (trithora... 30 0.45
Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical pr... 27 3.2
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch... 27 3.2
U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone... 27 3.2
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch... 27 3.2
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 27 4.2
U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical pr... 27 4.2
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 27 4.2
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 27 4.2
U49829-1|AAA93382.1| 138|Caenorhabditis elegans Hypothetical pr... 27 5.5
U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical pr... 27 5.5
U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily ass... 27 5.5
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 26 7.3
AF039042-10|AAC48252.2| 136|Caenorhabditis elegans Hypothetical... 26 7.3
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 26 7.3
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 26 9.7
U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna bindi... 26 9.7
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 26 9.7
AF043693-2|AAB97535.2| 351|Caenorhabditis elegans Hypothetical ... 26 9.7
AF039720-6|AAB96700.1| 347|Caenorhabditis elegans Hypothetical ... 26 9.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 205 bits (501), Expect = 7e-54
Identities = 94/120 (78%), Positives = 104/120 (86%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 189
LIV NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 148 LIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 207
Query: 190 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 369
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 267
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 205 bits (501), Expect = 7e-54
Identities = 94/120 (78%), Positives = 104/120 (86%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 189
LIV NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 148 LIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 207
Query: 190 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 369
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRV
Sbjct: 208 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 267
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 205 bits (500), Expect = 9e-54
Identities = 93/120 (77%), Positives = 104/120 (86%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 189
L+V NKMDSTEPP+SE+RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 190 MPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGRV 369
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+ LRLPLQDVYKIGGIGTVPVGRV
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRV 233
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 66.1 bits (154), Expect = 7e-12
Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPST 186
LIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 311 LIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RM 365
Query: 187 KMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGR 366
++ W+ +G CL+E +D+ + P P+D LR+ + DV K+ V G+
Sbjct: 366 ELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGK 413
Query: 367 V 369
+
Sbjct: 414 I 414
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 66.1 bits (154), Expect = 7e-12
Identities = 38/121 (31%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPST 186
LIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++
Sbjct: 329 LIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RM 383
Query: 187 KMPWFKGWLVERKEGKAEGKCLIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVGR 366
++ W+ +G CL+E +D+ + P P+D LR+ + DV K+ V G+
Sbjct: 384 ELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIGISDVLKVASNQLVVSGK 431
Query: 367 V 369
+
Sbjct: 432 I 432
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 53.6 bits (123), Expect = 4e-08
Identities = 40/93 (43%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Frame = +2
Query: 74 KSRRKSLPTSRKLVTI-RLPSLSYPFLAGTEITCWSRPPKCHGSRDGWLSVKKERLKVNA 250
+S +S +SR+ TI RL LS TE TC P CHGSRDG L+ +KE L
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQS-PDSTETTCLRSPRTCHGSRDGLLNARKETLPERP 210
Query: 251 LLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLE 349
R TPS A LT SVF + T+S LE
Sbjct: 211 SSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELE 243
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 53.2 bits (122), Expect = 6e-08
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Frame = +1
Query: 10 LIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPST 186
L++ VNKMD + E RF+EI+ +++ +++K+G+NP + +VP SG G + + T
Sbjct: 250 LVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPT 309
Query: 187 KMPWFKGWLVERKEGKAEGKCLIEALDAILPP-ARPTDKALRLPLQDVYKIGGIGTVPVG 363
W G C IE +D +LP R + +R + + Y +GTV +G
Sbjct: 310 GSE--GNWY--------SGPCFIEFIDVLLPSYKRDFNGPVRCTVAEKY--SEMGTVIIG 357
Query: 364 RV 369
++
Sbjct: 358 KM 359
>AC024859-2|AAK29971.2| 502|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 27
protein.
Length = 502
Score = 30.3 bits (65), Expect = 0.45
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Frame = -1
Query: 354 YCSNTADFVYVLQGKTESLV-SGASRRKDGVEGLNKAFTFSLSFFTLN-QPSLEPWHFGG 181
Y + + F Y L ++ + A RRKD + +++ F N P L W G
Sbjct: 207 YRTISRQFCYFLLAIAKNKIYEAAQRRKDARNAMETPIFYNVPFNVANFTPKLYFWAVGV 266
Query: 180 RLQHVISVPARNGYESDGSRIV 115
V VP+ N DG+ ++
Sbjct: 267 VTTRVNMVPSENQVGEDGNPVI 288
>Z75554-1|CAA99953.3| 681|Caenorhabditis elegans Hypothetical
protein ZC455.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 3.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 173 WSRPP-KCHGSRDGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSV 310
WS P K GS+D W + R +N+ R S + R + +RLSV
Sbjct: 6 WSATPIKMVGSQDSWGTPPHYRSSLNSNYRDSPANSRNTSARSRLSV 52
>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
protein 1 protein.
Length = 4568
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 7 GLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 153
GL G ++ ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1516 GLFSGSAEI-STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U41993-3|AAA83445.1| 384|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 39 protein.
Length = 384
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -1
Query: 351 CSNTADFVYVLQGKTESLVSGASRRKDGVEGLNKAFTFSLSFFTLNQPSL 202
CS T DF+ ++ ++ S + D V ++ ++ +++F+TL+ PSL
Sbjct: 80 CSTTNDFIINIEHSSDKKFSRLLQ--DLVSRDSRTYSKAINFYTLDDPSL 127
>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
protein.
Length = 4568
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 7 GLIVGVNKMDSTEPPYSESRFEEIKKEVSSYIKKIGYNPAAVAFVPISG 153
GL G ++ ST P+ SRF I +V + +KK+ +P + V + G
Sbjct: 1516 GLFSGSAEI-STLLPFESSRFATITTDVLALMKKVAASPRILDVVNMQG 1563
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 27.1 bits (57), Expect = 4.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 250 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVG 363
LI+ALD++ P R +P+ I G GTV VG
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
>U58756-9|AAC48086.1| 667|Caenorhabditis elegans Hypothetical
protein F58F9.7 protein.
Length = 667
Score = 27.1 bits (57), Expect = 4.2
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 110 LVTIRLPSLSYPFLAGTEITCWSRPPKC-HGSRDGWLSVKKERLKVNALL 256
++ +R P ++ L G I P C G +GW+ K R ++ALL
Sbjct: 206 VIQVRCPR-TFQTLPGITIGDMGSKPGCWQGVENGWMEFKNHRAPLSALL 254
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 72 LKSRLTVWWLSGVHFVYSYN 13
+KS L ++WL V+F +SYN
Sbjct: 250 IKSLLHIFWLPHVYFPFSYN 269
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 27.1 bits (57), Expect = 4.2
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 250 LIEALDAILPPARPTDKALRLPLQDVYKIGGIGTVPVG 363
LI+ALD++ P R +P+ I G GTV VG
Sbjct: 222 LIDALDSLPEPDRNEKDTFVMPIASKTAITGRGTVIVG 259
>U49829-1|AAA93382.1| 138|Caenorhabditis elegans Hypothetical
protein F27D9.3 protein.
Length = 138
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = +1
Query: 217 ERKEGKAEGKCLIEALDAILPPARPTDKA-LRLPLQ 321
E+K+GK + +C+ EA DA+ RP+D+ LR+ L+
Sbjct: 91 EKKQGK-KNECVREADDAVDARPRPSDRGRLRVLLE 125
>U40414-3|AAA81406.1| 321|Caenorhabditis elegans Hypothetical
protein F53B3.6 protein.
Length = 321
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 150 RNGYESDGSRIVTNFLDVGRDFLLDFLKSRLT 55
RN Y +DG ++ D+GRD DF S T
Sbjct: 101 RNEYPNDGGVVIPIRRDIGRDPQYDFRSSPQT 132
>U00045-1|AAM29684.1| 1099|Caenorhabditis elegans Temporarily
assigned gene nameprotein 204, isoform c protein.
Length = 1099
Score = 26.6 bits (56), Expect = 5.5
Identities = 21/93 (22%), Positives = 39/93 (41%)
Frame = -2
Query: 368 TLPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLNHGI 189
T+P T+ YTS + R+ + + +H S L+S++ LN+
Sbjct: 116 TVPETTIHRRSEEYTSYQPRKSKEEILQVNSASRPALPRQHSASTVSPLQSSSDELNNDS 175
Query: 188 LVDGSNMLSPCQPEMGTKATAAGL*PIFLM*EE 90
+D + SP E ++T + P ++ EE
Sbjct: 176 GIDNRTVGSPSTSEFSPRSTDLFVSPKSIIDEE 208
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 264 RRHPSACSPH*QGSPSSPARRIQNRR 341
+RHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
>AF039042-10|AAC48252.2| 136|Caenorhabditis elegans Hypothetical
protein ZK697.8 protein.
Length = 136
Score = 26.2 bits (55), Expect = 7.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 206 DGWLSVKKERLKVNALLRPSTPSFRLLAPLTRLSVFPCKTYTKSAVLEQYPWVE 367
+GW ++ + + N + +P F L+ RL YT V YP+VE
Sbjct: 54 NGWTNIGSQFTQDNGRVDWVSPDFTLIPGTYRLVYITEPYYTAKNVESFYPYVE 107
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 26.2 bits (55), Expect = 7.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 264 RRHPSACSPH*QGSPSSPARRIQNRR 341
+RHP+ QG P P +RIQN +
Sbjct: 542 QRHPNEGQQFQQGPPPPPPQRIQNHQ 567
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 28 KMDSTEPPYSESRFEEIKKEVSSYIKK 108
KMD +P E + EE KKE+ KK
Sbjct: 160 KMDDKKPGEKEEKKEEFKKEMKKEEKK 186
>U23515-7|AAK93859.3| 868|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform a protein.
Length = 868
Score = 25.8 bits (54), Expect = 9.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -2
Query: 365 LPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLN 198
LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 585 LPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 640
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 25.8 bits (54), Expect = 9.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -2
Query: 365 LPTGTVPIPPILYTSCRGRRRALSVGRAGGRMASRASIRHLPSAFPSLRSTNHPLN 198
LP+GT P P ++T R A SV M R S + F + PL+
Sbjct: 782 LPSGTQPTPDSVWTKKAKERAAASVTVPKSPMQRRESEEQKMNRFYPISKPTAPLD 837
>AF043693-2|AAB97535.2| 351|Caenorhabditis elegans Hypothetical
protein C34B2.3 protein.
Length = 351
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 222 TLNQPSLEPWHFGGRLQHV 166
TL PS PW + G L+H+
Sbjct: 206 TLKPPSAHPWKYVGSLRHM 224
>AF039720-6|AAB96700.1| 347|Caenorhabditis elegans Hypothetical
protein F33D11.7 protein.
Length = 347
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 222 TLNQPSLEPWHFGGRLQHV 166
TL PS PW + G L+H+
Sbjct: 205 TLKPPSAHPWKYVGSLRHM 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.316 0.138 0.421
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,888,025
Number of Sequences: 27780
Number of extensions: 212666
Number of successful extensions: 780
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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