Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G22
         (264 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    23   5.3  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    23   7.0  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    23   7.0  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    23   7.0  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    23   9.2  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    23   9.2  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    23   9.2  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    23   9.2  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 5.3
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 103 HAIFSQPDNAISTLSFFTRLRDLGKRADG 189
           H+I  Q DN    + FF     L KR  G
Sbjct: 573 HSIIKQSDNPTCIVEFFHSTNRLSKRVLG 601


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 76  KTELQEAHIHAIFSQPDNAISTLSFFTRL 162
           K +L +A+   + S+P +A+ST SF   L
Sbjct: 703 KLDLAKANSITLKSEPSSAVSTHSFEVHL 731


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1315

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 55   KSLTSVTKTELQEAHIHAIFSQPDNAISTLSFFTRLRDLGKRADGCVRRYDV*HASCD 228
            KS T+    EL +A I  +    DN ++++    R   L +     + R+D    S D
Sbjct: 855  KSTTATVIRELNDARIRTVMCTGDNVLTSICVGKRCGMLPEDGYVFLPRFDEESESAD 912


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 23.0 bits (47), Expect = 7.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +2

Query: 164 ATSVSARTVASGATTSDTPHATWDRSPPSLSTS 262
           AT+      ASG       H ++   PP +STS
Sbjct: 475 ATAAVVADHASGPVNGSYSHNSYSHIPPVMSTS 507


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 121 VVKRLHVYGPPEALSSLRWLGISWTF 44
           +V R++ Y P  ++ S   LGI+W F
Sbjct: 13  LVARIYNYIPHPSIFSNAILGIAWLF 38


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
          protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 1385

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 3  TRVDFSLKLPPTD*NVHEIPN 65
          +R +FS +L P+D N   +PN
Sbjct: 26 SRANFSRRLVPSDSNRKPVPN 46


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 103 HAIFSQPDNAISTLSFFTRLR 165
           H+ FSQ   A+ T S+F+  R
Sbjct: 318 HSTFSQEKPALDTNSYFSNFR 338


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 22.6 bits (46), Expect = 9.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 233 PRSHEACQTS*RRTQPSARLPRSRSLVKK 147
           PR   A  T+ R+  P+   PR R++ KK
Sbjct: 41  PRELVAQSTTSRKRDPNQPTPRERTVNKK 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 953,710
Number of Sequences: 5004
Number of extensions: 14894
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 53488084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)