Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G22
         (264 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417...    28   1.2  
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730           27   2.1  
01_01_0016 - 88825-90411                                               26   3.6  
01_06_1718 - 39408179-39408427,39409102-39409217,39409460-394096...    26   4.8  
10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223     25   6.3  
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136...    25   8.3  
01_05_0718 - 24575946-24576121,24576721-24576874,24576964-245770...    25   8.3  

>02_01_0567 -
           4168164-4168250,4168672-4168828,4168951-4169090,
           4170318-4170456,4170562-4170830,4170914-4171000,
           4171259-4171327,4171427-4171455,4171544-4171950,
           4172906-4172977,4173150-4173221,4173299-4173370,
           4173454-4173519,4173717-4173785,4173866-4173995,
           4174846-4174975
          Length = 664

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = +2

Query: 95  PIYMQSFHNLTTLYRR*VFLRGFATSVSARTVASGATTSDTPHATWDRSPPSLSTS 262
           P  + S  +LTTL     F    A S S  +  +G+T + TP +      PS S+S
Sbjct: 192 PPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPTGSTPTQTPSSPSSSGTPSPSSS 247


>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
          Length = 1072

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 76  KTELQEAHIHAIFSQP 123
           +TELQ AHIHA+   P
Sbjct: 317 RTELQPAHIHAVLMSP 332


>01_01_0016 - 88825-90411
          Length = 528

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 133 ISTLSFFTRLRDLGKRADGCVRRYD 207
           I T  F+ RLR +   A G  RRYD
Sbjct: 218 IPTTLFYRRLRTVANAARGTFRRYD 242


>01_06_1718 -
           39408179-39408427,39409102-39409217,39409460-39409603,
           39409700-39410930,39411213-39411494
          Length = 673

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 4/73 (5%)
 Frame = +1

Query: 46  MSTKSLTSVTKTELQEAHI--HAIF--SQPDNAISTLSFFTRLRDLGKRADGCVRRYDV* 213
           +  K +T V +T   +  I  H I   + P N    +       D+    D C +  DV 
Sbjct: 435 LENKQMTDVPRTSTDDGSIAVHGIDINALPSNTYPDIGQGNTYPDIDAAPDDCKKDKDVL 494

Query: 214 HASCDLGPQPALS 252
           H+ C+   Q A S
Sbjct: 495 HSECNKVAQKAHS 507


>10_08_1020 - 22309900-22310361,22310455-22310697,22311164-22311223
          Length = 254

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 31  HRLTKMSTKSLTSVTKTELQEAHIHAIFSQPDNAIS 138
           H  T  +T + T+  +  L+ AH  A  S  DN+ S
Sbjct: 181 HAATAAATATATAARRKRLRHAHAMASTSDSDNSTS 216


>04_04_0295 -
           24212526-24212684,24213066-24213218,24213497-24213601,
           24213694-24213913,24214033-24214199,24214323-24214497,
           24214627-24214799,24214914-24214983,24215401-24215900
          Length = 573

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 130 RCQVVKRLHVYG 95
           RC +V+ LHVYG
Sbjct: 494 RCSIVRELHVYG 505


>01_05_0718 -
           24575946-24576121,24576721-24576874,24576964-24577060,
           24577142-24577314,24577426-24577629,24577725-24577892,
           24577938-24578084
          Length = 372

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 18  SLKLPPTD*NVHEIPNQ-RNEDRASGGPYT 104
           SLK+  TD ++ EI +Q R ED A G  YT
Sbjct: 328 SLKVNLTDDDLKEISSQVREEDVAGGRQYT 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,764,305
Number of Sequences: 37544
Number of extensions: 108646
Number of successful extensions: 277
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 66
effective length of database: 12,315,444
effective search space used: 258624324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)