Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G22
         (264 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27081-1|CAA81606.1|  203|Caenorhabditis elegans Hypothetical pr...    26   3.2  
X74228-1|CAA52299.1|  491|Caenorhabditis elegans pha-1 protein.        25   5.6  
X73845-1|CAA52066.1|  491|Caenorhabditis elegans pha1 protein.         25   5.6  
AL032642-5|CAD91711.1|  453|Caenorhabditis elegans Hypothetical ...    25   5.6  
AL032642-4|CAA21655.1|  491|Caenorhabditis elegans Hypothetical ...    25   5.6  
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    25   9.8  

>Z27081-1|CAA81606.1|  203|Caenorhabditis elegans Hypothetical
           protein M01A8.1 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 103 HAIFSQPDNAISTLSFFTRLRDLGKRADGCVRRYDV*HAS 222
           H   S P + +  L   + + ++   A  CV RYD  HA+
Sbjct: 116 HPAMSTPSSTV--LDMESEITNITNHAQACVHRYDASHAN 153


>X74228-1|CAA52299.1|  491|Caenorhabditis elegans pha-1 protein.
          Length = 491

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 71  TLVRDFVDILVSRWKLQ-AEVNPR 3
           +L R+F+D+L+ +W ++  E+ PR
Sbjct: 289 SLPREFLDLLIKKWNVKTVEIVPR 312


>X73845-1|CAA52066.1|  491|Caenorhabditis elegans pha1 protein.
          Length = 491

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 71  TLVRDFVDILVSRWKLQ-AEVNPR 3
           +L R+F+D+L+ +W ++  E+ PR
Sbjct: 289 SLPREFLDLLIKKWNVKTVEIVPR 312


>AL032642-5|CAD91711.1|  453|Caenorhabditis elegans Hypothetical
           protein Y48A6C.5b protein.
          Length = 453

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 71  TLVRDFVDILVSRWKLQ-AEVNPR 3
           +L R+F+D+L+ +W ++  E+ PR
Sbjct: 251 SLPREFLDLLIKKWNVKTVEIVPR 274


>AL032642-4|CAA21655.1|  491|Caenorhabditis elegans Hypothetical
           protein Y48A6C.5a protein.
          Length = 491

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -2

Query: 71  TLVRDFVDILVSRWKLQ-AEVNPR 3
           +L R+F+D+L+ +W ++  E+ PR
Sbjct: 289 SLPREFLDLLIKKWNVKTVEIVPR 312


>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
           protein F07A11.4 protein.
          Length = 1095

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 170 SVSARTVASGATTSDTPHATWDRSPPS 250
           S +  T ++G+TTSDTP  +   +P S
Sbjct: 48  SRNLNTTSTGSTTSDTPKLSSSSAPRS 74


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 45  NVHEIPNQRNEDRASGGPY 101
           N    P   NE RAS GPY
Sbjct: 436 NFQHFPKLMNEQRASPGPY 454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,398,641
Number of Sequences: 27780
Number of extensions: 85956
Number of successful extensions: 218
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 66
effective length of database: 10,906,718
effective search space used: 229041078
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)