Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G21
         (294 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.          48   7e-06
AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.     31   0.89 
AK127270-1|BAC86909.1|  248|Homo sapiens protein ( Homo sapiens ...    30   1.2  

>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
          Length = 1183

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 22/81 (27%), Positives = 44/81 (54%)
 Frame = +1

Query: 13  LHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIKPTTQKVSAVLNYTRPKNIRELRRYLGM 192
           L + G  ++  K+Q+  P+V +LGFT+        +++   +     PK+ +++R++LG 
Sbjct: 356 LEDCGYKVSKKKAQICRPQVRYLGFTIRQGERSLGSERKQVICTLPEPKSRKQVRKFLGA 415

Query: 193 LNFYRKFIPYAAHVQAPLHNI 255
             F R +IP  A +  PL+ +
Sbjct: 416 AGFCRLWIPNFAVLAKPLYEV 436


>AB037726-1|BAA92543.2| 1819|Homo sapiens KIAA1305 protein protein.
          Length = 1819

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +1

Query: 103  GIKPTTQKVSAVLNYTRPKNIRELRRYLGMLNFYRKFIPYAAHVQAPLHNIL 258
            G  P  Q ++ +   T P N   L  ++G ++ +R  IP    +  PLH++L
Sbjct: 992  GKAPCQQVLAHLAQLTIPSNFTALSFFMGFMDSHRDAIPDYEALVGPLHSLL 1043


>AK127270-1|BAC86909.1|  248|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45337 fis, clone BRHIP3007960. ).
          Length = 248

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/83 (25%), Positives = 36/83 (43%)
 Frame = +1

Query: 13  LHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIKPTTQKVSAVLNYTRPKNIRELRRYLGM 192
           L+  G  IN  K +     V+FLG     A     ++    +L+   P   +E +  LG 
Sbjct: 99  LYARGWEINPTKIKETSTSVKFLGVQWCGACQDIPSKVKDKLLHLATPTTKKEAQCLLGR 158

Query: 193 LNFYRKFIPYAAHVQAPLHNILS 261
             F+R+  PY   +  P++ + S
Sbjct: 159 FGFWRQHGPYLGALLWPIYQVTS 181


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,595,391
Number of Sequences: 237096
Number of extensions: 807577
Number of successful extensions: 1182
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)