Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G21
(294 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 64 1e-11
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 64 1e-11
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 64 1e-11
Z95122-1|CAB08354.1| 359|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical p... 25 7.1
Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical p... 25 7.1
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 25 7.1
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 25 7.1
AC024750-2|AAF60439.1| 234|Caenorhabditis elegans Hypothetical ... 25 7.1
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 25 7.1
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 25 7.1
Z68217-5|CAC70098.1| 166|Caenorhabditis elegans Hypothetical pr... 25 9.4
U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symme... 25 9.4
AF026204-7|AAB71247.1| 272|Caenorhabditis elegans Hypothetical ... 25 9.4
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/89 (31%), Positives = 53/89 (59%)
Frame = +1
Query: 1 AQERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIKPTTQKVSAVLNYTRPKNIRELRR 180
A R+ + G+ + +K + EVE+LG VT G++ K + ++RP N++EL+
Sbjct: 1201 ALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQS 1260
Query: 181 YLGMLNFYRKFIPYAAHVQAPLHNILSGQ 267
+LG++ +YRKFI A + + L +++S +
Sbjct: 1261 FLGLVGYYRKFILNFAQIASSLTSLISAK 1289
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/89 (31%), Positives = 53/89 (59%)
Frame = +1
Query: 1 AQERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIKPTTQKVSAVLNYTRPKNIRELRR 180
A R+ + G+ + +K + EVE+LG VT G++ K + ++RP N++EL+
Sbjct: 1104 ALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQS 1163
Query: 181 YLGMLNFYRKFIPYAAHVQAPLHNILSGQ 267
+LG++ +YRKFI A + + L +++S +
Sbjct: 1164 FLGLVGYYRKFILNFAQIASSLTSLISAK 1192
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 64.5 bits (150), Expect = 1e-11
Identities = 28/89 (31%), Positives = 53/89 (59%)
Frame = +1
Query: 1 AQERLHEHGVLINCAKSQLGVPEVEFLGFTVTAAGIKPTTQKVSAVLNYTRPKNIRELRR 180
A R+ + G+ + +K + EVE+LG VT G++ K + ++RP N++EL+
Sbjct: 1115 ALTRIRKSGMKLRASKCHIAKKEVEYLGHKVTLDGVETQEVKTDKMKQFSRPTNVKELQS 1174
Query: 181 YLGMLNFYRKFIPYAAHVQAPLHNILSGQ 267
+LG++ +YRKFI A + + L +++S +
Sbjct: 1175 FLGLVGYYRKFILNFAQIASSLTSLISAK 1203
>Z95122-1|CAB08354.1| 359|Caenorhabditis elegans Hypothetical
protein VZC374L.1 protein.
Length = 359
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 132 TDLLCRWLNTCSSHRKTQKFHFRNAK 55
TD LCR++NTC K + + N K
Sbjct: 296 TDPLCRFINTCLRKNKDDRPKYVNLK 321
>Z69634-10|CAA93457.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -1
Query: 120 CRWLNTCSSHRKTQKF 73
C W+N C HR Q F
Sbjct: 136 CPWINNCVGHRNHQYF 151
>Z68507-8|CAA92831.2| 431|Caenorhabditis elegans Hypothetical
protein M18.8 protein.
Length = 431
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -1
Query: 120 CRWLNTCSSHRKTQKF 73
C W+N C HR Q F
Sbjct: 136 CPWINNCVGHRNHQYF 151
>Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical
protein B0464.5a protein.
Length = 1003
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 126 LLCRWLNTCSSHRK 85
L CRWLN S HR+
Sbjct: 5 LFCRWLNGFSQHRE 18
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 61 VPEVEFLGFTVTAAGIKP 114
VP F+GFTVT A ++P
Sbjct: 453 VPSEPFVGFTVTRAPLRP 470
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 61 VPEVEFLGFTVTAAGIKP 114
VP F+GFTVT A ++P
Sbjct: 453 VPSEPFVGFTVTRAPLRP 470
>AC024750-2|AAF60439.1| 234|Caenorhabditis elegans Hypothetical
protein Y17G9A.3 protein.
Length = 234
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 78 SGFYGDCCRY*ANDTKGQCSIKLYTS*KYTRVTQISRDVEFLPEIHSLCS 227
+ FYG+ +Y + G+C+I +Y S Y R T E+ +C+
Sbjct: 112 NSFYGNAEQYITSYNPGKCNIVIYRS-HYWRSTSKRAKNNIENEVKIICA 160
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 61 VPEVEFLGFTVTAAGIKP 114
VP F+GFTVT A ++P
Sbjct: 453 VPSEPFVGFTVTRAPLRP 470
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 61 VPEVEFLGFTVTAAGIKP 114
VP F+GFTVT A ++P
Sbjct: 453 VPSEPFVGFTVTRAPLRP 470
>Z68217-5|CAC70098.1| 166|Caenorhabditis elegans Hypothetical
protein F58G6.7 protein.
Length = 166
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +1
Query: 112 PTTQKVSAVLNYTRPKNIRELRRYLGMLNFYRKFIPYAAHVQAPLHN 252
P TQK + +TR I + +L F + FI Y+ + + +N
Sbjct: 85 PLTQKTVTLAPFTRDSLISKFHMASSLLVFVQHFIDYSLMLVSMTYN 131
>U41994-13|AAK31527.2| 1425|Caenorhabditis elegans Neuronal symmetry
protein 1 protein.
Length = 1425
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +1
Query: 58 GVPEVEFLGFTVTAAGIKPTTQKVSAVLNYTRPKNIRELRRYLG 189
GV ++ G AG+ P T+ + L Y P+ I +R G
Sbjct: 803 GVCKISDFGTCKRLAGLNPVTETFTGTLQYMAPEVIDHGQRGYG 846
>AF026204-7|AAB71247.1| 272|Caenorhabditis elegans Hypothetical
protein C30E1.2 protein.
Length = 272
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 209 NSFLMQPMYKLLCIISYQDNVLRLL 283
N +++ P+ + C++S Q+NV R L
Sbjct: 106 NQWIVSPLQTVECVLSEQNNVYRPL 130
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,689,570
Number of Sequences: 27780
Number of extensions: 126931
Number of successful extensions: 322
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 322
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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