Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G20
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase su...    63   1e-10
D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase su...    63   1e-10
AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical...    63   1e-10
Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      27   5.3  
U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr...    27   9.2  
Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormo...    27   9.2  
AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine r...    27   9.2  

>D86741-2|BAA21841.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 31/61 (50%), Positives = 34/61 (55%)
 Frame = +3

Query: 294 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 473
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 474 Y 476
           Y
Sbjct: 66  Y 66


>D86740-2|BAA13165.1|   92|Caenorhabditis elegans ATP synthase
           subunit protein.
          Length = 92

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 31/61 (50%), Positives = 34/61 (55%)
 Frame = +3

Query: 294 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 473
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 6   AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 65

Query: 474 Y 476
           Y
Sbjct: 66  Y 66


>AC090999-18|AAK26152.1|  116|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.3 protein.
          Length = 116

 Score = 62.9 bits (146), Expect = 1e-10
 Identities = 31/61 (50%), Positives = 34/61 (55%)
 Frame = +3

Query: 294 AVRTFQTTSVTKDIDSAAKFXXXXXXXXXXXXXXXXXXXXFGSLIIGYARNPSLKQQLFS 473
           A R   TT   KDIDSAAK+                    FG+L+IGYARNPSLKQQLFS
Sbjct: 30  AARMISTTVARKDIDSAAKYIGAGAATVGVAGSGAGIGNVFGALVIGYARNPSLKQQLFS 89

Query: 474 Y 476
           Y
Sbjct: 90  Y 90


>Z68105-2|CAA92118.1|  270|Caenorhabditis elegans Hypothetical
           protein F13E6.3 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 260 CVCRHCCEWSHKSCV 216
           C C+ C +WSH +CV
Sbjct: 236 CKCKGCDQWSHLTCV 250


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 323 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 174
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
           protein T14G8.1 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 323 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 174
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 323 DRGGLEGAHS**LSRCNWNN-LCVCRHCCEWSHKSCVAEDSSPGCRGDQSC 174
           ++G +E  H      CN +  L +C  C    H +C+ E+      GD SC
Sbjct: 256 EQGVVEENHQENCEVCNQDGELMLCDTCTRAYHVACIDENMEQPPEGDWSC 306


>U41996-5|AAA83474.1|  296|Caenorhabditis elegans Hypothetical
           protein F38E1.6 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 199 GLLSSATQLLCDHSQQCLHTHRLFQLHLLNY 291
           G+L S  +++ DH  QC H++  + L L N+
Sbjct: 85  GILKSVEEII-DHELQCAHSYSYYILVLANF 114


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 281 RCNWNNLCVCRHCCEWSHKSC 219
           RC  N  C   H C+ SHK C
Sbjct: 419 RCETNADCPSSHSCQGSHKVC 439


>Z82265-4|CAB05174.1|  293|Caenorhabditis elegans Hypothetical
           protein F02H6.6 protein.
          Length = 293

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 341 CCQIHWCWRSDSWSSWIRNG 400
           CC     W SD WSSW++NG
Sbjct: 117 CCPTGGVW-SD-WSSWVQNG 134


>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
            ZK1067.2 protein.
          Length = 2219

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = -2

Query: 404  NTRSGSSYSNCRCASTNEFGSRVNVFGDRG-GLEGAHS**LSRCNWNNLCVCRHCCEWSH 228
            + + G S   C+   TN+   +    G+RG G + +    L   N +N C  R C     
Sbjct: 1801 SAKCGESCPPCKAFCTNKCEHQSCGAGERGFGRDCSKLCALCVNNCSNKCAHRSCTLKCF 1860

Query: 227  KSCVAEDSSPGCRGDQSCGIQHFCV 153
            + C  +  +  C     CG  H C+
Sbjct: 1861 EECNVKPCTEPCTDKLKCG--HACL 1883


>Z46241-8|CAA86316.2| 1784|Caenorhabditis elegans Hypothetical
           protein C38D4.3 protein.
          Length = 1784

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -2

Query: 182 QSCGIQHFCVLRGATPDK-IYTLTHT 108
           QSCG +HF +     PD    T+TH+
Sbjct: 91  QSCGAEHFVLALAVDPDSPAMTITHS 116


>AF106581-7|ABC48241.1|  362|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 135 protein.
          Length = 362

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 257 VCRHCCEWSHKSCVAEDSSPGCRGDQSCGIQH 162
           +CR C  +  +  ++  S+  CR D+SC I +
Sbjct: 24  ICRACSAFFRRYVLSPKSAIKCRKDKSCRIHY 55


>AF024503-15|AAG24087.2|  289|Caenorhabditis elegans Serpentine
           receptor, class x protein22 protein.
          Length = 289

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 96  FS*CNTFYSVMVCDLYTFSRLAFITIFTEPSC 1
           FS C  FY V+ C  Y  +R    T    P C
Sbjct: 132 FSICFLFYDVLGCYFYYDTRTFTFTFLDSPKC 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,067,025
Number of Sequences: 27780
Number of extensions: 225008
Number of successful extensions: 652
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)