Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G19
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    23   4.2  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    23   5.5  
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    23   5.5  

>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 26  YLCLFIKSNVAHTSVVAKYLLI*TICLF 109
           Y CLFI   +   S+   ++L+ ++ LF
Sbjct: 479 YRCLFISGTICQWSLKDMFVLVASLTLF 506


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +2

Query: 17  IYLYLCLFIKSNVAHTSVVAKYLL 88
           IYL +CLF  ++V   +++ ++ L
Sbjct: 67  IYLAVCLFFLASVLSCAIIFRFYL 90


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 81  YFATTDVCATLDFMNKQRYKYILGPSC 1
           Y  + D    L   +   Y Y+LGP+C
Sbjct: 135 YHTSDDKFDKLGLDDSLNYPYVLGPTC 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 479,555
Number of Sequences: 5004
Number of extensions: 5548
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 2,362,478
effective HSP length: 25
effective length of database: 2,237,378
effective search space used: 42510182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)