Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G19
         (136 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0068 - 495582-497981                                             25   6.4  
05_02_0038 + 5890103-5890522,5891442-5891515,5891605-5891680,589...    25   8.5  

>07_01_0068 - 495582-497981
          Length = 799

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 20  YLYLCLFIKSNVAHTSVVAKYLLI*TICLFKLLIIY 127
           YLY  ++ K+ V+H+S       I T CL   ++++
Sbjct: 292 YLYDMVYTKAPVSHSSAGCVLRFICTTCLVVAIVLF 327


>05_02_0038 +
           5890103-5890522,5891442-5891515,5891605-5891680,
           5891892-5891959,5892189-5892312,5892714-5892812,
           5893576-5893677,5893759-5893895,5894068-5894149,
           5894668-5894730,5895680-5895727,5895833-5895895,
           5896055-5896108,5896190-5896294
          Length = 504

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 11  PNIYLYLCLFIKSNVAHTSVVAKYL 85
           PN+YL+LC+F        S++A+ L
Sbjct: 351 PNVYLWLCMFYAFFHLWLSILAEIL 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,933
Number of Sequences: 37544
Number of extensions: 26583
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 14,793,348
effective HSP length: 25
effective length of database: 13,854,748
effective search space used: 263240212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)