Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G19
         (136 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical pr...    25   7.4  
Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ...    25   9.8  

>Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical
           protein T09E8.4 protein.
          Length = 406

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   EGPNIYLYLCLFIKSNVAHTSVVAKYLLI 91
           +GP  YL   LF+ S +A T +   +L++
Sbjct: 36  KGPGYYLVTTLFVVSIIASTLLTGSFLVL 64


>Z82278-9|CAE17877.1|  323|Caenorhabditis elegans Hypothetical
          protein W04E12.9 protein.
          Length = 323

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +2

Query: 14 NIYLYLCLFIKSNVAHTSVVAKY 82
          N+Y+YL LF++SN   T++++ +
Sbjct: 22 NLYIYLHLFVQSNT--TTIISNF 42


>Z82070-8|CAE17980.1|  323|Caenorhabditis elegans Hypothetical
          protein W04E12.9 protein.
          Length = 323

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +2

Query: 14 NIYLYLCLFIKSNVAHTSVVAKY 82
          N+Y+YL LF++SN   T++++ +
Sbjct: 22 NLYIYLHLFVQSNT--TTIISNF 42


>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
            protein Y76B12C.7 protein.
          Length = 1454

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +2

Query: 20   YLYLCLFIKSNVAHTSVVAKYLLI*TICLFKLLIIYY 130
            YL+L L+ K+++A    V +Y +I  +   + +  YY
Sbjct: 1418 YLHLSLYDKTDLARRLGVGRYHIIDDLMQLRRMAFYY 1454


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,232
Number of Sequences: 27780
Number of extensions: 29617
Number of successful extensions: 53
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 12,740,198
effective HSP length: 25
effective length of database: 12,045,698
effective search space used: 228868262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)