Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G19
         (136 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   4.1  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              19   4.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   7.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   7.2  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/11 (45%), Positives = 7/11 (63%)
 Frame = +3

Query: 63  HQLWRNICLFR 95
           H +WR  C F+
Sbjct: 85  HNIWRPDCFFK 95


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 19 IFIPLLIHKI*CSAHISCG 75
          I + LLI  + CS  + CG
Sbjct: 5  ILLSLLITCLICSPSVHCG 23


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 123 IINNLNKQIV*ISKYFATTDVCATLDFMNKQRYK 22
           +IN   + +V    +FA  D     D + K RY+
Sbjct: 442 VINYNCRSLVASVPFFANADSNFVSDVVTKLRYE 475


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -2

Query: 123 IINNLNKQIV*ISKYFATTDVCATLDFMNKQRYK 22
           +IN   + +V    +FA  D     D + K RY+
Sbjct: 410 VINYNCRSLVASVPFFANADSNFVSDVVTKLRYE 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,786
Number of Sequences: 438
Number of extensions: 324
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 25
effective length of database: 135,393
effective search space used:  2572467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)