Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G18
(211 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 37 3e-04
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 34 0.003
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 33 0.005
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 27 0.45
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 0.78
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 1.0
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 25 1.8
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 25 1.8
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 3.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 4.2
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 23 4.2
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 23 5.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 23 5.5
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch... 23 7.3
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 23 7.3
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 22 9.6
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 37.1 bits (82), Expect = 3e-04
Identities = 14/29 (48%), Positives = 23/29 (79%)
Frame = +3
Query: 3 TRARSVEEDIVERAKRKMVLDHLVIQRMD 89
T SVEE I++ A++K+VLDHL+++ +D
Sbjct: 996 TTRDSVEEKIIQNAQKKLVLDHLIVESLD 1024
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 33.9 bits (74), Expect = 0.003
Identities = 13/21 (61%), Positives = 20/21 (95%)
Frame = +3
Query: 15 SVEEDIVERAKRKMVLDHLVI 77
+VEEDI+ERA+RKM+L++ +I
Sbjct: 833 TVEEDILERARRKMILEYAII 853
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 143 NNPFNKEDLNAILKFGA 193
N+ ++ ++L+AILKFGA
Sbjct: 866 NDKYDAQELSAILKFGA 882
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 33.1 bits (72), Expect = 0.005
Identities = 11/21 (52%), Positives = 20/21 (95%)
Frame = +3
Query: 15 SVEEDIVERAKRKMVLDHLVI 77
++EED++ERA+RKM+L++ +I
Sbjct: 819 TIEEDVLERARRKMILEYAII 839
Score = 27.1 bits (57), Expect = 0.34
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +2
Query: 143 NNPFNKEDLNAILKFGA 193
N+ F+ E+L+AILKFGA
Sbjct: 852 NDKFSAEELSAILKFGA 868
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.6 bits (56), Expect = 0.45
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 12 RSVEEDIVERAKRKMVLDHLVIQ 80
+S+EE+I+ RA+ K+ LD VIQ
Sbjct: 1315 KSIEENILSRAQYKLDLDGKVIQ 1337
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.8 bits (54), Expect = 0.78
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 12 RSVEEDIVERAKRKMVLDHLVIQ 80
+SVEE+I+ RA+ K+ +D VIQ
Sbjct: 864 KSVEENILARAQYKLDIDGKVIQ 886
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 1.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 32 SRESEKENGSRSPRHTADGYDGQNSVEQCGSRP 130
S E E+ENG+R +D D + + E+ +P
Sbjct: 161 SEEEEEENGARIEELNSDEEDAEQAEEEILEKP 193
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +3
Query: 21 EEDIVERAKRKMVLDHLVIQRMDTTGRTVLNNAGAV 128
EED+ E + R++ +D+ ++ +DT R +L + +
Sbjct: 146 EEDLEEGSLRQLEVDNRLVLPIDTRIRLILTSGDVI 181
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = -2
Query: 177 MAFKSSLLKGLFAVVAGRLPHCSTLFCPSYPSAV*RGDREPFSFSLSRLYLPPQ 16
+ ++ + K L AV + +LP+ + P+ GD ++S LY P+
Sbjct: 77 LGVRADVGKYLLAVASIQLPYLNQTVPPTTMEGASAGDESSLRVNISNLYSHPE 130
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 23.8 bits (49), Expect = 3.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = -3
Query: 152 KDCSLSWQD--GSRIVQHCSARRIHPLYDEVIENHF 51
K C L Q+ G+ +VQH I P + +IE F
Sbjct: 646 KSCLLLVQNAYGNYLVQHVLELNIQPYTERIIEKFF 681
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 23.4 bits (48), Expect = 4.2
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 83 DGYDGQNSVEQCGSRPATTANNPF 154
DGY G + S+PAT NN F
Sbjct: 52 DGYAGNTMLPFQQSQPATQFNNGF 75
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 23.4 bits (48), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 23 GRYSRESEKENGSRSPRH 76
G SR S + NGSR+P H
Sbjct: 675 GNMSRPSFELNGSRNPSH 692
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 23.0 bits (47), Expect = 5.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = -3
Query: 95 RRIHPLYDEVIENH 54
R++H + DEV+E H
Sbjct: 471 RKLHKMVDEVLERH 484
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 23.0 bits (47), Expect = 5.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 36 ERAKRKMVLDHLVIQRMDTTGRTVLNN 116
E A K L+HL + +D G+T ++N
Sbjct: 1499 ELADSKNELEHLQSEAVDADGKTEISN 1525
>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 333
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 98 QNSVEQCGSRPATTANNPFNKED 166
Q E+CG T N P N+E+
Sbjct: 102 QPPCEKCGGETHMTGNGPPNEEE 124
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 160 LVKRIVRCRGRTAPALFNTVLPVVSIRCM 74
L K + C P FNT+L +++ RCM
Sbjct: 751 LAKSLDECVDPKEP-YFNTLLRILTTRCM 778
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 22.2 bits (45), Expect = 9.6
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 177 MAFKSSLLKGLFAVV 133
+ F+SSL+ GLFA+V
Sbjct: 869 LKFESSLIVGLFALV 883
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 927,880
Number of Sequences: 5004
Number of extensions: 15915
Number of successful extensions: 60
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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