Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G18
         (211 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    63   2e-11
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    31   0.11 
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    31   0.11 
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr...    29   0.45 
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr...    29   0.45 
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.      29   0.45 
U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw (imit...    28   0.79 
Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical pr...    25   5.6  
AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopam...    25   5.6  
AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopam...    25   5.6  
Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine r...    25   7.3  
U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fus...    25   9.7  
EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell f...    25   9.7  

>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
           protein H06O01.2 protein.
          Length = 1461

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 32/38 (84%), Positives = 36/38 (94%), Gaps = 1/38 (2%)
 Frame = +3

Query: 15  SVEEDIVERAKRKMVLDHLVIQRMDTTGRTVLN-NAGA 125
           SVEE+IVERAKRK+VLDHLVIQRMDTTG+TVL+ NA A
Sbjct: 840 SVEEEIVERAKRKLVLDHLVIQRMDTTGKTVLSKNATA 877



 Score = 30.3 bits (65), Expect = 0.20
 Identities = 14/25 (56%), Positives = 21/25 (84%), Gaps = 1/25 (4%)
 Frame = +2

Query: 122 SRPATTANN-PFNKEDLNAILKFGA 193
           S+ AT + + PF+K++L+AILKFGA
Sbjct: 872 SKNATASGSVPFDKQELSAILKFGA 896


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 12   RSVEEDIVERAKRKMVLDHLVIQ 80
            +SVEE I   AK+KM+L+HLV++
Sbjct: 1054 KSVEEKITSVAKKKMLLNHLVVR 1076


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 12   RSVEEDIVERAKRKMVLDHLVIQ 80
            +SVEE I   AK+KM+L+HLV++
Sbjct: 1054 KSVEEKITSVAKKKMLLNHLVVR 1076


>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical protein
            T14G8.1 protein.
          Length = 1787

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 15   SVEEDIVERAKRKMVLDHLVIQ 80
            SVEE I   AK+KM+L HLV++
Sbjct: 1069 SVEERITSVAKKKMLLTHLVVR 1090


>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical protein
            T14G8.1 protein.
          Length = 1787

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 15   SVEEDIVERAKRKMVLDHLVIQ 80
            SVEE I   AK+KM+L HLV++
Sbjct: 1069 SVEERITSVAKKKMLLTHLVVR 1090


>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
          Length = 1787

 Score = 29.1 bits (62), Expect = 0.45
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +3

Query: 15   SVEEDIVERAKRKMVLDHLVIQ 80
            SVEE I   AK+KM+L HLV++
Sbjct: 1069 SVEERITSVAKKKMLLTHLVVR 1090


>U00032-5|AAA50636.2| 1009|Caenorhabditis elegans Yeast isw
           (imitation swi) homologprotein 1 protein.
          Length = 1009

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
 Frame = +3

Query: 15  SVEEDIVERAKRKMVLDHLVIQ--RMDTTGRTV 107
           +V+E I+E+A+ K+ LD++VIQ  RM    +T+
Sbjct: 564 TVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTL 596


>Z81547-4|CAB04458.1|  368|Caenorhabditis elegans Hypothetical
           protein F53F8.5 protein.
          Length = 368

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +2

Query: 35  RESEKENGSRSPRHTADGYDGQNSVEQCGSRPATTANNPFNKEDLNA 175
           R S   + SRS  H       ++     G  P+++++N FN+   N+
Sbjct: 321 RASAPSSSSRSAHHHHQPRHHRHDTSSRGGAPSSSSSNVFNRLSFNS 367


>Z81104-7|CAB70253.2|  647|Caenorhabditis elegans Hypothetical
           protein M199.3 protein.
          Length = 647

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 17  CGGRYSRESEKENGSRSPRHTADGYDGQNS----VEQCGSRPATTANNPFNKED 166
           C   Y   S +E+G    R    GY+ Q S    VE+C S    T + P N+E+
Sbjct: 477 CPDDYWTYSPRESGDYCFRAGIAGYNEQISYETAVERCKSEYNATFSGPVNEEE 530


>Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical
           protein K09G1.4b protein.
          Length = 840

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 211 SLNNSSCAKLQNGVQILLVKRIVRCRGRTAPALF 110
           S NNS  A + N     L+  I+R   R +P LF
Sbjct: 495 SRNNSRTASITNQSDDALIPAIIRTISRKSPRLF 528


>Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical
           protein K09G1.4a protein.
          Length = 705

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 211 SLNNSSCAKLQNGVQILLVKRIVRCRGRTAPALF 110
           S NNS  A + N     L+  I+R   R +P LF
Sbjct: 360 SRNNSRTASITNQSDDALIPAIIRTISRKSPRLF 393


>AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopamine
           receptor shortvariant protein.
          Length = 705

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 211 SLNNSSCAKLQNGVQILLVKRIVRCRGRTAPALF 110
           S NNS  A + N     L+  I+R   R +P LF
Sbjct: 360 SRNNSRTASITNQSDDALIPAIIRTISRKSPRLF 393


>AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopamine
           receptor longvariant protein.
          Length = 840

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 211 SLNNSSCAKLQNGVQILLVKRIVRCRGRTAPALF 110
           S NNS  A + N     L+  I+R   R +P LF
Sbjct: 495 SRNNSRTASITNQSDDALIPAIIRTISRKSPRLF 528


>Z81481-2|CAB03948.1|  593|Caenorhabditis elegans Hypothetical
           protein C38D9.2 protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 80  ADGYDGQNSVEQCGSRPATTANNP 151
           +DGY  +NS EQ  S   TT   P
Sbjct: 246 SDGYSSENSNEQDSSFETTTEETP 269


>AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine
           receptor, class t protein23 protein.
          Length = 356

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 184 LQNGVQILLVKRIVRCRGRTAPALFNTVLPVVSI 83
           ++ GV  LLV RI+R + R       T+ P++S+
Sbjct: 305 VRRGVIDLLVPRIIRDKARIGSNRTTTLRPILSV 338


>U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fusion
           failure protein1 protein.
          Length = 589

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 208 LNNSSCAKLQNGVQILLVKRI 146
           L+N+ C KLQN V +L  +R+
Sbjct: 74  LDNTICIKLQNVVHVLKYERL 94


>EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell
           fusion failure-1 protein.
          Length = 589

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 208 LNNSSCAKLQNGVQILLVKRI 146
           L+N+ C KLQN V +L  +R+
Sbjct: 74  LDNTICIKLQNVVHVLKYERL 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,231,894
Number of Sequences: 27780
Number of extensions: 93593
Number of successful extensions: 301
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 49
effective length of database: 11,378,978
effective search space used: 227579560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)