Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G17
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1382 - 33141860-33142153                                         29   0.98 
04_04_1361 - 32890775-32890837,32891071-32891239,32891285-328914...    27   4.0  
03_05_0448 - 24426509-24426737,24427306-24427401,24427723-244278...    26   6.9  
07_03_0153 - 14481421-14481506,14481933-14482111,14483046-144831...    25   9.2  

>04_04_1382 - 33141860-33142153
          Length = 97

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = -2

Query: 263 FLYMLYITWPLVWPLSP*VWLP 198
           FL++ +++ PL+WPL+  +WLP
Sbjct: 14  FLHLFHLSAPLLWPLN--LWLP 33


>04_04_1361 -
           32890775-32890837,32891071-32891239,32891285-32891402,
           32891760-32891861,32891930-32892000,32892315-32892532,
           32892653-32893048,32893822-32893937,32894021-32894087
          Length = 439

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 269 YLFLYMLYITWPLVWPLS 216
           YL L+ L + W LVWPL+
Sbjct: 311 YLGLFSLVLLWWLVWPLT 328


>03_05_0448 -
           24426509-24426737,24427306-24427401,24427723-24427847,
           24428694-24428846,24429921-24430247,24431415-24431630,
           24431768-24432112,24433897-24434253
          Length = 615

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 263 FLYMLYITWPLVWPLSP*VWLP 198
           FLY L IT  L WP     WLP
Sbjct: 34  FLYDLVITHALEWPSLTVQWLP 55


>07_03_0153 -
           14481421-14481506,14481933-14482111,14483046-14483130,
           14483301-14483499,14484222-14484292,14484380-14484486,
           14484571-14484703,14484870-14485020,14485147-14485249,
           14485330-14485438,14485587-14485746,14486293-14486394,
           14486892-14487009,14487596-14487750,14487850-14487948,
           14488078-14488167
          Length = 648

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 154 AQKDPPSAPQEEDAQGSQT*GESGQTSGQVIYNIYKNK 267
           A+ D P AP  E++  S+       T G V    YKN+
Sbjct: 44  AESDEPDAPAVEESDSSEDEVAPRNTIGDVPLEWYKNE 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,981,377
Number of Sequences: 37544
Number of extensions: 36130
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)