Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G16
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    27   1.1  
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...    25   2.6  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    24   6.0  
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    24   7.9  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 58  NSDYKPKISGTTQAPALKEAEIAYMKLIEEKNRERVKKLQ 177
           NS Y    S   +   LK+  +   + +EE+N+ERV  L+
Sbjct: 371 NSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALE 410


>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 317 YYCCIFAGSSKSSRNVSCFTAKIEYK*TPSTPVPIAQP--VSRFLL 186
           Y  C++AG + S  N     ++ EY+  P   + +     +SRFLL
Sbjct: 181 YKACLYAGINISGINAEVMPSQWEYQVGPCAGIEMGDQLWMSRFLL 226


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 112 EAEIAYMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGVYLYSIFAVKQETFLDDFE 291
           +++I    +  E   E ++K++ + R +R+    +G  V          + QETFL D+E
Sbjct: 601 QSQIKSQSVHHENAAEEIRKMRNL-RNSRINSQQVGEKVFVNPDVKTMDI-QETFLQDYE 658

Query: 292 E 294
           +
Sbjct: 659 D 659


>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 194 FLLAMVCNFLTRSRFFSSINFM*AISASFN 105
           FL+A + NFLT S     + F+  I+  F+
Sbjct: 468 FLMASIKNFLTESELTMVLQFLDDIAFDFS 497


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,481
Number of Sequences: 5004
Number of extensions: 27351
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)