Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G16
         (351 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821...    29   1.4  
03_01_0418 - 3211687-3211933,3212016-3212164,3212443-3212551,321...    29   1.4  
06_01_0861 + 6527279-6527582,6527619-6527719,6527817-6528042,652...    28   2.4  
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561     27   3.1  
10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899     26   7.2  

>05_04_0347 +
           20479682-20479753,20480136-20480813,20481143-20482195,
           20482345-20482406,20482491-20482541,20482635-20482719,
           20483253-20483342,20483472-20483563,20483704-20483728
          Length = 735

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 345 HNFLGHSHGLLL---LYFRRFFKVVKECLLLHSEN-RIQVNAEYSG 220
           H   G  +GL+     YF  +FK ++E   L  +N + ++N +YSG
Sbjct: 59  HEEFGKFNGLVAKKKAYFEEYFKRIRELKALQQQNQQTELNLDYSG 104


>03_01_0418 -
           3211687-3211933,3212016-3212164,3212443-3212551,
           3212650-3212840,3212967-3213102,3213216-3213716,
           3213819-3213923,3214008-3214095,3214195-3214266,
           3214692-3214762,3215726-3216008,3216388-3216463
          Length = 675

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 55  GNSDYKPKISGTTQAPALKEAEIAYMKLIEEKNRERVKKLQTIARRNR 198
           GN       S T +A  L  +++ Y  L +E+N+ R KK     ++N+
Sbjct: 52  GNDQSTTLESNTPRATGLLLSDLEYQSLSKERNKSREKKSMKGTKKNK 99


>06_01_0861 +
           6527279-6527582,6527619-6527719,6527817-6528042,
           6528132-6528475,6528624-6528989,6529080-6529347,
           6529479-6529696
          Length = 608

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 171 IANHRQKKPTNWLCNRNRSTRRLLVFYFRCE 263
           +++   K    WLCN + +T    VF F CE
Sbjct: 572 LSDKENKGKRGWLCNASDATLNAWVFKFLCE 602


>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
          Length = 827

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +2

Query: 23  IFINNFRFSLWVTRITNRKL---AARLRPQH*RR 115
           I+ N F FS+W T   N+ +   A R RP H RR
Sbjct: 56  IYSNAFAFSIWYTNSKNKTVVWTANRGRPVHARR 89


>10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899
          Length = 280

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 115 AEIAYMKLIEEKNRERVKKLQTIARRNR 198
           A++  M++ EEK +  +KK+Q + R  R
Sbjct: 180 AKLYAMEIAEEKEKANLKKIQDVLRNER 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,438,735
Number of Sequences: 37544
Number of extensions: 177921
Number of successful extensions: 369
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)