Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G16
         (351 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   3.3  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    22   5.8  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    22   5.8  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 82   SGTTQAPALKEAEIAYMKLIEEKNRERVKKLQTIARRNR 198
            +GT Q P+L        KL+ +K+R++  K      R +
Sbjct: 1378 AGTGQQPSLTTGGAVPFKLLTKKSRDQALKAINFIEREQ 1416


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 328  LPWFTTVVFSPVLQSRQGMSPASQRK 251
            L   T V F  V +  QGM P ++RK
Sbjct: 954  LQHMTQVPFRCVDEINQGMDPTNERK 979


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 296 RRKYNSSKPWEWPR 337
           RR+  S++P  WPR
Sbjct: 277 RRRSRSTRPTSWPR 290


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,900
Number of Sequences: 2352
Number of extensions: 6202
Number of successful extensions: 24
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 25364985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)