Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G16
(351 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC002698-1|AAH02698.1| 106|Homo sapiens coiled-coil domain cont... 43 3e-04
BC065284-1|AAH65284.1| 1381|Homo sapiens CDH23 protein protein. 29 4.1
AY010111-1|AAG27034.2| 3354|Homo sapiens cadherin 23 protein. 29 4.1
AK093818-1|BAC04231.1| 455|Homo sapiens protein ( Homo sapiens ... 29 4.1
AF312024-1|AAG48303.1| 3354|Homo sapiens cadherin related 23 pro... 29 4.1
AL772287-2|CAI13626.1| 3359|Homo sapiens cadherin-like 23 protein. 29 5.5
AL731541-6|CAI40841.1| 3359|Homo sapiens cadherin-like 23 protein. 29 5.5
AL359183-3|CAI13426.1| 3359|Homo sapiens cadherin-like 23 protein. 29 5.5
BC107577-1|AAI07578.1| 354|Homo sapiens DNAJA5 protein protein. 28 9.5
BC050472-1|AAH50472.1| 373|Homo sapiens DNAJA5 protein protein. 28 9.5
BC009194-1|AAH09194.1| 485|Homo sapiens polymerase (DNA directe... 28 9.5
BC000913-1|AAH00913.2| 433|Homo sapiens POLG2 protein protein. 28 9.5
AY258422-1|AAP81807.1| 531|Homo sapiens DnaJ domain protein pro... 28 9.5
AY177688-1|AAO46910.1| 531|Homo sapiens GS3 protein protein. 28 9.5
AK127749-1|BAC87112.1| 460|Homo sapiens Accn1). protein. 28 9.5
AF177201-1|AAD56640.1| 485|Homo sapiens mitochondrial DNA polym... 28 9.5
AF142992-1|AAD50382.1| 485|Homo sapiens DNA polymerase gamma ac... 28 9.5
>BC002698-1|AAH02698.1| 106|Homo sapiens coiled-coil domain
containing 56 protein.
Length = 106
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = +1
Query: 190 RNRLTGCAIGTGVLGVYLYSIFAVKQETFLDDFEEPAK 303
RN +TG IG VL +Y Y+ +++ QE FLD+ E+ AK
Sbjct: 56 RNIVTGLGIGALVLAIYGYTFYSISQERFLDELEDEAK 93
>BC065284-1|AAH65284.1| 1381|Homo sapiens CDH23 protein protein.
Length = 1381
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 61 SDYKPKISGTTQAPALKEAEIA-YMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGV 237
+ Y +S T QAP + + Y+ L+ E + E V+ L A+GT ++ V
Sbjct: 1277 TSYMMNVSATDQAPPFNQGFCSVYITLLNELD-EAVQFSNASYEAAILENLALGTEIVRV 1335
Query: 238 YLYSIFAVKQETFLDD 285
YSI + Q T+ D
Sbjct: 1336 QAYSIDNLNQITYRFD 1351
>AY010111-1|AAG27034.2| 3354|Homo sapiens cadherin 23 protein.
Length = 3354
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 61 SDYKPKISGTTQAPALKEAEIA-YMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGV 237
+ Y +S T QAP + + Y+ L+ E + E V+ L A+GT ++ V
Sbjct: 1277 TSYMMNVSATDQAPPFNQGFCSVYITLLNELD-EAVQFSNASYEAAILENLALGTEIVRV 1335
Query: 238 YLYSIFAVKQETFLDD 285
YSI + Q T+ D
Sbjct: 1336 QAYSIDNLNQITYRFD 1351
>AK093818-1|BAC04231.1| 455|Homo sapiens protein ( Homo sapiens
cDNA FLJ36499 fis, clone THYMU2019197, weakly similar to
Homo sapiens FLAMINGO 1 mRNA. ).
Length = 455
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 61 SDYKPKISGTTQAPALKEAEIA-YMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGV 237
+ Y +S T QAP + + Y+ L+ E + E V+ L A+GT ++ V
Sbjct: 98 TSYMMNVSATDQAPPFNQGFCSVYITLLNELD-EAVQFSNASYEAAILENLALGTEIVRV 156
Query: 238 YLYSIFAVKQETFLDD 285
YSI + Q T+ D
Sbjct: 157 QAYSIDNLNQITYRFD 172
>AF312024-1|AAG48303.1| 3354|Homo sapiens cadherin related 23 protein.
Length = 3354
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 61 SDYKPKISGTTQAPALKEAEIA-YMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGV 237
+ Y +S T QAP + + Y+ L+ E + E V+ L A+GT ++ V
Sbjct: 1277 TSYMMNVSATDQAPPFNQGFCSVYITLLNELD-EAVQFSNASYEAAILENLALGTEIVRV 1335
Query: 238 YLYSIFAVKQETFLDD 285
YSI + Q T+ D
Sbjct: 1336 QAYSIDNLNQITYRFD 1351
>AL772287-2|CAI13626.1| 3359|Homo sapiens cadherin-like 23 protein.
Length = 3359
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 61 SDYKPKISGTTQAPALKEAEIA-YMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGV 237
+ Y +S T QAP + + Y+ L+ E + E V+ L A+GT ++ V
Sbjct: 1282 TSYMMNVSATDQAPPFNQGFCSVYITLLNELD-EAVQFSNASYEAAILENLALGTEIVRV 1340
Query: 238 YLYSIFAVKQETF 276
YSI + Q T+
Sbjct: 1341 QAYSIDNLNQITY 1353
>AL731541-6|CAI40841.1| 3359|Homo sapiens cadherin-like 23 protein.
Length = 3359
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 61 SDYKPKISGTTQAPALKEAEIA-YMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGV 237
+ Y +S T QAP + + Y+ L+ E + E V+ L A+GT ++ V
Sbjct: 1282 TSYMMNVSATDQAPPFNQGFCSVYITLLNELD-EAVQFSNASYEAAILENLALGTEIVRV 1340
Query: 238 YLYSIFAVKQETF 276
YSI + Q T+
Sbjct: 1341 QAYSIDNLNQITY 1353
>AL359183-3|CAI13426.1| 3359|Homo sapiens cadherin-like 23 protein.
Length = 3359
Score = 28.7 bits (61), Expect = 5.5
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 61 SDYKPKISGTTQAPALKEAEIA-YMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGV 237
+ Y +S T QAP + + Y+ L+ E + E V+ L A+GT ++ V
Sbjct: 1282 TSYMMNVSATDQAPPFNQGFCSVYITLLNELD-EAVQFSNASYEAAILENLALGTEIVRV 1340
Query: 238 YLYSIFAVKQETF 276
YSI + Q T+
Sbjct: 1341 QAYSIDNLNQITY 1353
>BC107577-1|AAI07578.1| 354|Homo sapiens DNAJA5 protein protein.
Length = 354
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 124 AYMKLIEEKNRERVKKLQTIARRNRL 201
A+ KL+EE+N E+ +K + + R+ +L
Sbjct: 94 AHRKLVEEQNAEKARKAEEMRRQQKL 119
>BC050472-1|AAH50472.1| 373|Homo sapiens DNAJA5 protein protein.
Length = 373
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 124 AYMKLIEEKNRERVKKLQTIARRNRL 201
A+ KL+EE+N E+ +K + + R+ +L
Sbjct: 61 AHRKLVEEQNAEKARKAEEMRRQQKL 86
>BC009194-1|AAH09194.1| 485|Homo sapiens polymerase (DNA directed),
gamma 2, accessory subunit protein.
Length = 485
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 94 QAPALKEAEIAYMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGVYLYSIFAVKQET 273
+AP E A +++ + ++ K Q ++R + L+GC G G LGV L A + T
Sbjct: 58 EAPGSGEGSEALLEICQRRHFLSGSK-QQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWT 116
Query: 274 FLDDFEE 294
+ F E
Sbjct: 117 SVVVFRE 123
>BC000913-1|AAH00913.2| 433|Homo sapiens POLG2 protein protein.
Length = 433
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 94 QAPALKEAEIAYMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGVYLYSIFAVKQET 273
+AP E A +++ + ++ K Q ++R + L+GC G G LGV L A + T
Sbjct: 6 EAPGSGEGSEALLEICQRRHFLSGSK-QQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWT 64
Query: 274 FLDDFEE 294
+ F E
Sbjct: 65 SVVVFRE 71
>AY258422-1|AAP81807.1| 531|Homo sapiens DnaJ domain protein
protein.
Length = 531
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 124 AYMKLIEEKNRERVKKLQTIARRNRL 201
A+ KL+EE+N E+ +K + + R+ +L
Sbjct: 219 AHRKLVEEQNAEKARKAEEMRRQQKL 244
>AY177688-1|AAO46910.1| 531|Homo sapiens GS3 protein protein.
Length = 531
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 124 AYMKLIEEKNRERVKKLQTIARRNRL 201
A+ KL+EE+N E+ +K + + R+ +L
Sbjct: 219 AHRKLVEEQNAEKARKAEEMRRQQKL 244
>AK127749-1|BAC87112.1| 460|Homo sapiens Accn1). protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 124 AYMKLIEEKNRERVKKLQTIARRNRL 201
A+ KL+EE+N E+ +K + + R+ +L
Sbjct: 103 AHRKLVEEQNAEKARKAEEMRRQQKL 128
>AF177201-1|AAD56640.1| 485|Homo sapiens mitochondrial DNA
polymerase accessory subunit precursor protein.
Length = 485
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 94 QAPALKEAEIAYMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGVYLYSIFAVKQET 273
+AP E A +++ + ++ K Q ++R + L+GC G G LGV L A + T
Sbjct: 58 EAPGSGEGSEALLEICQRRHFLSGSK-QQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWT 116
Query: 274 FLDDFEE 294
+ F E
Sbjct: 117 SVVVFRE 123
>AF142992-1|AAD50382.1| 485|Homo sapiens DNA polymerase gamma
accessory subunit protein.
Length = 485
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 94 QAPALKEAEIAYMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGVYLYSIFAVKQET 273
+AP E A +++ + ++ K Q ++R + L+GC G G LGV L A + T
Sbjct: 58 EAPGSGEGSEALLEICQRRHFLSGSK-QQLSRDSLLSGCHPGFGPLGVELRKNLAAEWWT 116
Query: 274 FLDDFEE 294
+ F E
Sbjct: 117 SVVVFRE 123
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,669,747
Number of Sequences: 237096
Number of extensions: 1037434
Number of successful extensions: 2716
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2716
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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