Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G16
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical pr...    47   3e-06
U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical pr...    31   0.23 
U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical pr...    31   0.23 
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...    31   0.31 
Z81040-1|CAB02781.1|  145|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical pr...    27   5.0  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    26   6.6  

>U29381-1|AAA68751.2|  133|Caenorhabditis elegans Hypothetical
           protein F35D11.5 protein.
          Length = 133

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 20/56 (35%), Positives = 38/56 (67%)
 Frame = +1

Query: 127 YMKLIEEKNRERVKKLQTIARRNRLTGCAIGTGVLGVYLYSIFAVKQETFLDDFEE 294
           + K  E+ N+ERVK++     +N ++   +   V+G+Y Y++++VKQETFL++ +E
Sbjct: 62  FAKQFEKVNQERVKEIFAKNYKNHISFAVLLGVVIGIYWYTMYSVKQETFLEEIDE 117


>U29377-2|AAA68713.4|  627|Caenorhabditis elegans Hypothetical
           protein K05F1.6b protein.
          Length = 627

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 350 ICITFLATPMVYYCCIFAGSSKSSRNVSCFT 258
           +CI F+AT +VYY  + A S +S+   + FT
Sbjct: 343 VCIVFMATALVYYGLVMALSDQSAPGRTLFT 373


>U29377-1|AAZ94294.1|  773|Caenorhabditis elegans Hypothetical
           protein K05F1.6a protein.
          Length = 773

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 350 ICITFLATPMVYYCCIFAGSSKSSRNVSCFT 258
           +CI F+AT +VYY  + A S +S+   + FT
Sbjct: 489 VCIVFMATALVYYGLVMALSDQSAPGRTLFT 519


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -2

Query: 317 YYCCIFAGSSKSSRNVSCFTAKIEYK*TPSTPVPIAQP--VSRFLLAMVC 174
           Y  C++AG   S  NV    ++ EY+  P   + +     VSR++L  +C
Sbjct: 185 YRACMYAGIKISGSNVESMPSQFEYQVGPCEGIEMGDQLWVSRYILHRIC 234


>Z81040-1|CAB02781.1|  145|Caenorhabditis elegans Hypothetical
           protein C26E1.1 protein.
          Length = 145

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +1

Query: 73  PKISGTTQAPALKEAEIAYMKLIEEKNRERVKKLQTIARR-NRLTGCAIGTGVLGVYLYS 249
           P++SG      LKE  + ++K  E+ +R R + +  I RR  ++TG  I    +   LY 
Sbjct: 54  PRVSGK-----LKEKLLQFVKTPEDLDRPRKRAIIHICRRIKKITGQDIDPEYISKLLYG 108

Query: 250 IFAVKQETF 276
           +   +++ F
Sbjct: 109 LKRARRDKF 117


>Z81056-5|CAB02905.2|  307|Caenorhabditis elegans Hypothetical
           protein F09F3.7 protein.
          Length = 307

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -1

Query: 321 GLLLLYFRRFFKVVKECLLLHSENRIQVNAEYSGSY 214
           G  ++YF   FK+V  C +  ++N + V+ + S ++
Sbjct: 264 GATMVYFHSNFKLVCSCKIASTKNVVMVSGKESSAF 299


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 264 LHSENRIQVNAEYSGSYCTTS*SVSSGD 181
           ++S+   Q+    SG+YCTTS S  SG+
Sbjct: 72  MNSQYGNQMGTTGSGTYCTTSYSCRSGE 99


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,172,479
Number of Sequences: 27780
Number of extensions: 157580
Number of successful extensions: 455
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)