Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G13
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    47   2e-06
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    27   1.1  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    27   1.5  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   4.5  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   4.5  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.9  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    25   7.9  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 46.8 bits (106), Expect = 2e-06
 Identities = 31/69 (44%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
 Frame = +3

Query: 246 QIGGEKNGGTRTVLL--KSRKSFYPTQDKIRGRSHGKSFSKHVRRT--RPNLTPGTVCIL 413
           ++ G KNGG R VL   ++   +YP   +    +  K   K VR T  R +L PGTVCIL
Sbjct: 5   KVNGAKNGGERMVLPAGEAAAKYYPAYRE----NVPKKARKAVRPTKLRASLAPGTVCIL 60

Query: 414 LAGRHAGKR 440
           LAGR  GKR
Sbjct: 61  LAGRFRGKR 69


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +3

Query: 276 RTVLLKSRKSFYPTQDKIRGR----SHGKSFSKHVRRTRPNLTP 395
           RT+L +  K FYP      GR     H    SK  R+ R   TP
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTP 145


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -2

Query: 218 LFSKRVLLTDKLIYSLLVVHPAFGETEYTVSEVIIPRFA 102
           L SKR +  +  +  LL +  A+G  E   SE +IP+F+
Sbjct: 434 LRSKRSIKQEPWVRELLEIFIAYGYFEVPESEEVIPKFS 472


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 124 SETVYSVSPKAGCTTRRLYISLSVRRTRLLKSPRNQP 234
           SET  S S K+G T+RR   S    R + LK    +P
Sbjct: 2   SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRP 38


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 303 SFYPTQDKIRGRSHGKSFSKHVRRTRPNLTPGTVCILLAGRHAGKR 440
           +FY      R  SH  S S     ++P LT  +  +L +  H  +R
Sbjct: 422 AFYHNSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYER 467


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 82  VSRSRKLANRGIMTSETVYSVSPKAGCTTRRLYISLSVRRTRLLKSPRNQPSWLSK 249
           ++ S   ++RG  T E V     + G T+   Y SLS+     +K  +N P   SK
Sbjct: 189 LATSASNSDRGASTPEMVVKAEKREGSTSPIPYSSLSI--AERIKQAQNTPFLESK 242


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 469 PLGNTPTSTTRLPACLPANR 410
           P  N  T  TRLP  +P+NR
Sbjct: 330 PRFNLATGATRLPFAIPSNR 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,771
Number of Sequences: 5004
Number of extensions: 42714
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)