Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0020_G12
(306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po... 110 5e-26
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom... 38 3e-04
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 28 0.36
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 0.82
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|... 26 1.1
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 25 2.5
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 25 2.5
SPAC27D7.06 |||electron transfer flavoprotein alpha subunit|Schi... 25 2.5
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 24 4.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 24 5.8
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c... 24 5.8
SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha... 24 5.8
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 24 5.8
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 24 5.8
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar... 23 7.7
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 23 7.7
>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 346
Score = 110 bits (264), Expect = 5e-26
Identities = 51/90 (56%), Positives = 68/90 (75%), Gaps = 5/90 (5%)
Frame = +1
Query: 31 VVAIGFEGSANKLGIGIVR-----DGEILANCRRTYITPPGLGFLPRETAEHHQRNIHDL 195
++A+G EGSANKLG+GI+ +ILAN R TYITPPG GFLP +TA+HH+ I L
Sbjct: 5 LIALGLEGSANKLGVGIILHDTNGSAKILANVRHTYITPPGQGFLPSDTAKHHRAWIIPL 64
Query: 196 LKQAFEDSGLTPKDIDVVCYTKGPGMSAPL 285
+KQAF ++ ++ KDID +C+TKGPG+ APL
Sbjct: 65 IKQAFAEAKISFKDIDCICFTKGPGIGAPL 94
>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 412
Score = 38.3 bits (85), Expect = 3e-04
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 13/100 (13%)
Frame = +1
Query: 31 VVAIGFEGSANKLGIGIVRDGEILANCRRTYI---TPPGL-------GFLPRETAEHHQR 180
+ A+ E S + + +VR + ++C+ I T + G P HQ+
Sbjct: 39 LTALAIETSCDDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQK 98
Query: 181 NIHDLLKQAFED---SGLTPKDIDVVCYTKGPGMSAPLMV 291
N+ ++++ D SG+T D D++ T+GPGM PL V
Sbjct: 99 NLAKVIQRTISDAARSGIT--DFDLIAVTRGPGMIGPLAV 136
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.9 bits (59), Expect = 0.36
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 250 TPHQYPLGLIRSLQKLVSTNHEYFSGD-VQLFPEV 149
+PH Y + L +SL KL H Y D V++ P+V
Sbjct: 853 SPHGYIIDLSKSLIKLYKVLHRYSQRDCVEVIPDV 887
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 0.82
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 131 GVMYVLLQFASISPSLTMPIPSLLALPSKPIATTIIFDI 15
G ++ + ++ SPS+ MP ++ PS PI ++I F++
Sbjct: 425 GDLFSKINISTESPSVAMPSIPVIQPPSFPIFSSIDFNV 463
>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 1.1
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = -2
Query: 98 ISPSLTMPIPSLLALPSKPIATTIIFDI 15
+ P +T+P+PSLL+ ++ + T+ F+I
Sbjct: 249 LPPCVTLPVPSLLSF-ARSVLLTVSFEI 275
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 2.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 100 VFLHLLQCQYQAY*RFLRNQSPLPLYLILFCLV 2
VFLHLL C+ ++ +FL+ + L ++ +V
Sbjct: 269 VFLHLLPCERTSFKKFLKTFDFIGLVCVITGIV 301
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 2.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 244 HQYPLGLIRSLQKLVSTNHEYFSGDVQLFPEVKSLVRVE*CMFSCNLQVFL 92
+QY LG IR++Q +T HE+ ++ P V+ ++ ++ V L
Sbjct: 250 YQYYLGRIRAIQLDYTTAHEHLVSAIRKAPNTVYAVQFLEAVYKLHIVVQL 300
>SPAC27D7.06 |||electron transfer flavoprotein alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 2.5
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 7 GKIISNIMVVAIGFEGSANKLGIGIVRDGEILANCRRTYITP 132
GKII+ + +A+G +G+ L GI +D +++A R P
Sbjct: 278 GKIIAPKLYIAVGIDGAIQHLA-GI-KDSKVIAAINRDENAP 317
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 24.2 bits (50), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 96 NTCKLQENIHYSTRTR-LFTSGNS 164
NTC +Q+N+ STR+ +T NS
Sbjct: 17 NTCLIQKNVAVSTRSHSSYTGRNS 40
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 23.8 bits (49), Expect = 5.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 226 LIRSLQKLVSTNHEYFSGDVQLFPE 152
++ S+ ++ST ++ GD Q+FP+
Sbjct: 181 VVESVNVVISTYYDKVLGDCQVFPD 205
>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 708
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 133 PGLGFLPRETAEHHQRNIHDLL 198
P +G L +ET EH +RN+ + L
Sbjct: 686 PLIGKLLQETFEHRKRNLDETL 707
>SPAC8C9.06c |||mitochondrial translation regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 931
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 232 LGLIRSLQKLVSTNHEYFSGDVQLFPEV 149
LG I+ ++++ST EYFS ++ P++
Sbjct: 697 LGDIKEAKQVLSTYLEYFSKNITSKPDI 724
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 23.8 bits (49), Expect = 5.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -3
Query: 226 LIRSLQKLVSTNHEYFSGDVQLFPE 152
++ S+ ++ST ++ GD Q+FP+
Sbjct: 181 VVESVNVVISTYYDKVLGDCQVFPD 205
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -3
Query: 118 FSCNLQVFLHLLQCQYQAY*RFLRNQSPLPLYLILFCL 5
F+ +L+ +LH++ + Y + SP+ + L L C+
Sbjct: 311 FTLSLRFWLHVISFLWNDYESISKEISPIAINLTLDCI 348
>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 102 KYFSISYNANTKLISASFETNR 37
KYF+IS N L+ + TNR
Sbjct: 69 KYFNISSNPRVSLLVHDWTTNR 90
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 23.4 bits (48), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 208 KLVSTNHEYFSGDVQLFPEVKSLVRVE*CMFSCNL 104
K++ N F+G + EV L R++ C F NL
Sbjct: 320 KMLKKNAAKFTGKERHLQEVSILQRLQACPFVVNL 354
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,281
Number of Sequences: 5004
Number of extensions: 28359
Number of successful extensions: 84
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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