Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G12
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical...   104   1e-23
Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical pr...    46   5e-06
AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical ...    28   1.1  
Z81534-1|CAB04346.1|  284|Caenorhabditis elegans Hypothetical pr...    27   2.6  
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    27   2.6  
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    27   2.6  
Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z18853-1|CAA79305.1|  282|Caenorhabditis elegans capping protein...    26   6.0  
Z18805-1|CAA79269.1|  282|Caenorhabditis elegans capping protein...    26   6.0  
U41011-3|AAA82286.1|  282|Caenorhabditis elegans Cap-z protein p...    26   6.0  
Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>AC024859-27|AAK29978.4|  337|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.1 protein.
          Length = 337

 Score =  104 bits (249), Expect = 1e-23
 Identities = 51/95 (53%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = +1

Query: 28  MVVAIGFEGSANKLGIGIVRDGEILANCRRTYITPPGLGFLPRETAEHHQRNIHDLLKQA 207
           MV  IG EGSANK+G+GI+RDG +L+N R T+  PPG GF P ETA+HH++ I  L+ +A
Sbjct: 1   MVCVIGIEGSANKIGVGIIRDGVVLSNPRATFHAPPGEGFRPTETAQHHRQQIVRLVGEA 60

Query: 208 FEDSGL-TPK-DIDVVCYTKGPGMSAPLMVCTIVA 306
            + + +  P+ +ID + YTKGPGM APL V  IVA
Sbjct: 61  IKLANIQNPELEIDGIAYTKGPGMGAPLQVGAIVA 95


>Z81030-8|CAB02716.1|  421|Caenorhabditis elegans Hypothetical
           protein C01G10.10 protein.
          Length = 421

 Score = 46.0 bits (104), Expect = 5e-06
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
 Frame = +1

Query: 22  NIMVVAIGFEGSANKLGIGIVRDG-EILANCRRTY--ITPPGLGFLPRETAEHHQRNIHD 192
           N  V  +G E S +   + IV +  EIL++ R T   I     G  P   A  H+ N+  
Sbjct: 20  NYSVKVLGIETSCDDTAVAIVNEKREILSSERYTERAIQRQQGGINPSVCALQHRENLPR 79

Query: 193 LLKQAFEDSGLTPKDIDVVCYTKGPGM 273
           L+++   D+G +PKD+D V  T  PG+
Sbjct: 80  LIEKCLNDAGTSPKDLDAVAVTVTPGL 106


>AL022288-4|CAA18365.1|  461|Caenorhabditis elegans Hypothetical
           protein ZK1025.7 protein.
          Length = 461

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 115 RTYITPPGLGFLPRETAEHHQRNIHDLLKQAFEDS 219
           R  I      F P +TA H  RN+HD + + FE+S
Sbjct: 370 RAKIVRKSYRFFPNDTAGHI-RNMHDTMNKIFENS 403


>Z81534-1|CAB04346.1|  284|Caenorhabditis elegans Hypothetical
           protein F37H8.1 protein.
          Length = 284

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 16  ISNIMVVAIGFEGSANKLGIGIVRDGEIL 102
           +SN MV + G    A+ +G+G + D +I+
Sbjct: 90  VSNSMVTSTGIRQEASSVGVGPIEDDDIV 118


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 95  SPSLTMPIPSLLALPSKPIATTIIF 21
           SPS T+ IP+ + +  KPI T ++F
Sbjct: 301 SPSNTVTIPAAVDVERKPIPTNVLF 325


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 95  SPSLTMPIPSLLALPSKPIATTIIF 21
           SPS T+ IP+ + +  KPI T ++F
Sbjct: 301 SPSNTVTIPAAVDVERKPIPTNVLF 325


>Z81100-2|CAB03192.2|  332|Caenorhabditis elegans Hypothetical
           protein K08G2.5 protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 152 GKKPSPGGVMYVLLQFASISPSLTMPIPSLLALPSK 45
           G+K S    +Y LL   + + +LT P+P  L+LP++
Sbjct: 126 GQKYSTMRKLYRLLFATAYALALTFPVPIYLSLPNQ 161


>Z18853-1|CAA79305.1|  282|Caenorhabditis elegans capping protein
           alpha subunit protein.
          Length = 282

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 208 KLVSTNHEYFSGDVQLFPEVKSLVRV 131
           K++S  H Y  G+VQLF E + +++V
Sbjct: 188 KILSQVHYYEDGNVQLFSEKEPVLKV 213


>Z18805-1|CAA79269.1|  282|Caenorhabditis elegans capping protein
           alpha subunit protein.
          Length = 282

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 208 KLVSTNHEYFSGDVQLFPEVKSLVRV 131
           K++S  H Y  G+VQLF E + +++V
Sbjct: 188 KILSQVHYYEDGNVQLFSEKEPVLKV 213


>U41011-3|AAA82286.1|  282|Caenorhabditis elegans Cap-z protein
           protein 1 protein.
          Length = 282

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 208 KLVSTNHEYFSGDVQLFPEVKSLVRV 131
           K++S  H Y  G+VQLF E + +++V
Sbjct: 188 KILSQVHYYEDGNVQLFSEKEPVLKV 213


>Z50863-3|CAA90735.1|  830|Caenorhabditis elegans Hypothetical
           protein C14H10.3 protein.
          Length = 830

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 119 VLLQFASISPSLTMPIPSLLALPSKPIAT 33
           +L+   S   S+T+PI   L +PS P+ T
Sbjct: 359 ILVHVLSQVDSMTVPIALWLGIPSAPVVT 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,874,301
Number of Sequences: 27780
Number of extensions: 161051
Number of successful extensions: 401
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)