Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G12
         (306 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   0.84 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   1.5  
AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced prot...    21   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   3.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   7.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   7.9  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 34  VAIGFEGSANKLGIGIVRDGEI 99
           +A+GF G A    IGIV D  +
Sbjct: 98  LAVGFSGLAAGFAIGIVGDAGV 119


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -3

Query: 247 PHQYPLGLIRSLQKLVSTNHEYFSGDVQLFPEVKSLVRVE*CMFSCNLQVFLHLLQ 80
           P +  LG + SL  L + N +      Q  P V  +  ++  M SC++ VFL L++
Sbjct: 243 PARVTLG-VTSLLTLATQNTQ----SQQSLPPVSYVKAIDVWMSSCSVFVFLSLME 293


>AB264332-1|BAF44087.1|   58|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 58

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 145 FLPRETAEHHQRNIHDLLKQAFEDSGLTPKDIDVVCYTKGPGMSAPLM 288
           F PR ++   Q+   D+L  + E      +    VCY   P  S  L+
Sbjct: 6   FKPRGSSAEEQQPSGDILSPSSEPLDNDKEQSAQVCYRGAPQDSENLL 53


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +1

Query: 145 FLPRETAEHHQRNIHDLLKQAFEDSGLTPKDIDVVCYTKGPGMSAPLM 288
           F PR ++   Q+   D+L  + E      +    VCY   P  S  L+
Sbjct: 6   FKPRGSSAEEQQPSGDILSPSSEPLDNDKEQSAQVCYRGAPQDSENLL 53


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 9   QNNIKYNGSGD 41
           +NN++Y GS D
Sbjct: 293 ENNVQYEGSQD 303


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 9   QNNIKYNGSGD 41
           +NN++Y GS D
Sbjct: 288 ENNVQYQGSED 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,673
Number of Sequences: 438
Number of extensions: 2037
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)