Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0020_G11
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   0.99 
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   1.3  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   2.3  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    26   2.3  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    25   3.0  
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.3  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    25   5.3  
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    25   5.3  
SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase |Schizosaccharom...    25   5.3  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    24   7.0  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    24   9.3  

>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 190 RDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNN 300
           R++ +CT S   Q  CPS LA  LDK   +   KV++
Sbjct: 142 RELQKCTASYYHQNACPSSLA--LDKSISEAFAKVDH 176


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 357 GLVGFQDGQDFSRLLQFVTVVDFTLPVAG 271
           G++G + G  +SRL   VTVV+F LP  G
Sbjct: 226 GIIGLEMGSVWSRLGAEVTVVEF-LPAVG 253


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = -2

Query: 338 MGKIFLGFSSLSQLLTLPFQSQVCLSRSNASPD-----GQVICLRPDLVHLTTSLQSPSV 174
           MG  F      S ++  P   + CL+  +A+PD      Q + L   +  L T   SP +
Sbjct: 217 MGLYFDNVGWSSHIIHRPSFEEACLNLYSAAPDRTNPQPQFLSLTYMVFCLGTLFTSPVL 276

Query: 173 LRRKYSSA 150
           +R +YS A
Sbjct: 277 VRNRYSLA 284


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 208 TRSGLKQITCPSGLAFDLDKQTCDWKGKV 294
           TRS   ++  P  +  +LDKQT D K KV
Sbjct: 461 TRSAPGELVKPQEVIQELDKQTSDIKDKV 489


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = +2

Query: 155 TNISVSAPKAIVEMSS--GALGQVLNRSLA 238
           +N SV+AP+AIV  S+  G +G +LN  +A
Sbjct: 271 SNASVAAPRAIVMTSAFGGIVGWLLNLCIA 300


>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 320

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 266 LSRSNASPDGQVICLRPDLVHLTTSLQSPSVL 171
           +S S    DG ++ LR  L+H   SL   S+L
Sbjct: 261 ISHSLKLKDGSILVLRSSLLHQWYSLPKQSIL 292


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 290 LPFQSQVCLSRSNASPDGQVICLRPDLVHLTTSLQSPSVLR-RKYSSA 150
           L FQ+Q     SN SP GQ + +R ++  L   + + ++ R   Y+SA
Sbjct: 136 LGFQNQASSILSNRSPSGQYV-IRKNIEKLACLVHNEAMRRCSSYTSA 182


>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 79  SRVKRQEDDGSDDLTPDQLCEGRPADEYFRLSTEGDCRDV 198
           S++ + + D +DD + +   E  P  E+  +ST+G C  V
Sbjct: 149 SQLYKTQHDENDDASDNSDVEEDPILEHKSISTKGACNRV 188


>SPCC14G10.01 ||SPCC18B5.12|dephospho-CoA kinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 236

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +1

Query: 190 RDVVRCTRSGLKQITCPSGLAFDLDKQTCDWKGKVNNCDKLEKPRKIL 333
           ++++RC   G   +     L F+   Q   WK    +CDK  + +++L
Sbjct: 98  KELLRCYVRGYSIVILDVPLLFEAKMQFICWKTICVSCDKSIQKQRLL 145


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 375 FSFRTDGLVGFQDGQDFSRLLQFVTVVDFTLPVAGLLIKIECQSRRAS 232
           F  RTDGLV   + Q   RL      V +  PV   +I+I+  ++R S
Sbjct: 229 FRKRTDGLVHISNIQLNGRLDHPSEAVSYGQPVFVKVIRIDESAKRIS 276


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = +2

Query: 161 ISVSAPKAIVEMSS--GALGQVLNR 229
           +++ A KAI ++SS  GA+G+VL R
Sbjct: 269 VALKAAKAISDVSSAEGAVGEVLER 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.136    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,332,063
Number of Sequences: 5004
Number of extensions: 22570
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)